Best TWAS P=4.63e-11 · Best GWAS P=1.12e-09 conditioned to 0.429
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Visceral Omentum | WDR18 | 0.50 | 0.43 | enet | 16 | 0.55 | 1.7e-33 | 6.1 | 5.4 | 6.8e-08 | 0.86 | 0.00 | 1.00 | FALSE |
2 | GTEx | Adrenal Gland | WDR18 | 0.57 | 0.18 | lasso | 8 | 0.32 | 2.7e-12 | 6.1 | 5.4 | 6.5e-08 | 0.90 | 0.00 | 1.00 | FALSE |
3 | GTEx | Artery Aorta | WDR18 | 0.54 | 0.53 | lasso | 7 | 0.66 | 1.9e-47 | 6.1 | 5.5 | 3.8e-08 | 0.90 | 0.00 | 1.00 | FALSE |
4 | GTEx | Artery Coronary | WDR18 | 0.74 | 0.47 | lasso | 11 | 0.56 | 2.6e-22 | 6.1 | 5.7 | 9.6e-09 | 0.93 | 0.00 | 1.00 | FALSE |
5 | GTEx | Artery Tibial | DOT1L | 0.09 | 0.06 | lasso | 5 | 0.05 | 7.3e-05 | -5.6 | -5.2 | 1.9e-07 | 0.01 | 0.02 | 0.98 | FALSE |
6 | GTEx | Brain Hippocampus | WDR18 | 0.47 | 0.16 | enet | 34 | 0.20 | 2.3e-05 | 6.1 | 5.2 | 2.4e-07 | 0.75 | 0.00 | 0.99 | FALSE |
7 | GTEx | Breast Mammary Tissue | WDR18 | 0.61 | 0.54 | enet | 23 | 0.67 | 3.7e-45 | 6.1 | 5.5 | 2.9e-08 | 0.87 | 0.00 | 1.00 | FALSE |
8 | GTEx | Colon Sigmoid | WDR18 | 0.67 | 0.53 | enet | 34 | 0.63 | 6.4e-28 | 6.1 | 5.1 | 2.9e-07 | 0.83 | 0.00 | 1.00 | FALSE |
9 | GTEx | Colon Transverse | WDR18 | 0.52 | 0.45 | lasso | 6 | 0.53 | 3.6e-29 | 6.1 | 5.7 | 1.6e-08 | 0.92 | 0.00 | 1.00 | FALSE |
10 | GTEx | Esophagus Gastroesophageal Junction | WDR18 | 0.51 | 0.40 | lasso | 4 | 0.60 | 5.9e-27 | 6.1 | 5.3 | 1.3e-07 | 0.87 | 0.00 | 1.00 | FALSE |
11 | GTEx | Esophagus Muscularis | WDR18 | 0.62 | 0.42 | lasso | 6 | 0.68 | 7.6e-56 | 6.1 | 5.1 | 2.7e-07 | 0.85 | 0.00 | 1.00 | FALSE |
12 | GTEx | Heart Left Ventricle | WDR18 | 0.46 | 0.47 | enet | 13 | 0.56 | 5.8e-35 | 6.1 | 5.6 | 2.2e-08 | 0.89 | 0.00 | 1.00 | FALSE |
13 | GTEx | Lung | WDR18 | 0.43 | 0.39 | lasso | 4 | 0.51 | 6.1e-45 | 6.1 | 5.4 | 7.0e-08 | 0.87 | 0.00 | 1.00 | FALSE |
14 | GTEx | Muscle Skeletal | WDR18 | 0.47 | 0.46 | lasso | 3 | 0.53 | 3.6e-61 | 6.1 | 5.6 | 2.1e-08 | 0.94 | 0.00 | 1.00 | FALSE |
15 | GTEx | Ovary | WDR18 | 0.61 | 0.57 | enet | 16 | 0.61 | 1.0e-18 | 6.1 | 6.1 | 1.0e-09 | 0.92 | 0.00 | 1.00 | FALSE |
16 | GTEx | Pancreas | WDR18 | 0.43 | 0.42 | lasso | 6 | 0.47 | 3.7e-22 | 6.1 | 5.8 | 7.3e-09 | 0.93 | 0.00 | 1.00 | FALSE |
17 | GTEx | Pituitary | WDR18 | 0.80 | 0.31 | lasso | 12 | 0.47 | 2.6e-13 | 6.1 | 5.5 | 2.9e-08 | 0.87 | 0.00 | 1.00 | FALSE |
18 | GTEx | Skin Sun Exposed Lower leg | WDR18 | 0.43 | 0.44 | lasso | 4 | 0.49 | 1.0e-45 | 6.1 | 5.7 | 1.0e-08 | 0.94 | 0.00 | 1.00 | FALSE |
19 | GTEx | Spleen | ABCA7 | 0.38 | 0.16 | lasso | 5 | 0.16 | 5.0e-05 | 4.1 | -5.2 | 1.8e-07 | -0.62 | 0.01 | 0.88 | FALSE |
20 | GTEx | Spleen | WDR18 | 0.44 | 0.21 | lasso | 5 | 0.30 | 1.6e-08 | 6.1 | 6.6 | 4.6e-11 | 0.86 | 0.00 | 1.00 | TRUE |
21 | GTEx | Stomach | WDR18 | 0.52 | 0.40 | enet | 30 | 0.44 | 2.5e-23 | 6.1 | 5.2 | 2.3e-07 | 0.87 | 0.00 | 1.00 | FALSE |
22 | GTEx | Testis | WDR18 | 0.48 | 0.46 | enet | 18 | 0.54 | 5.9e-28 | 6.1 | 5.4 | 6.4e-08 | 0.87 | 0.00 | 1.00 | FALSE |
23 | GTEx | Thyroid | WDR18 | 0.56 | 0.60 | enet | 10 | 0.64 | 1.7e-62 | 6.1 | 5.8 | 5.8e-09 | 0.95 | 0.00 | 1.00 | FALSE |
24 | GTEx | Uterus | WDR18 | 0.61 | 0.52 | lasso | 4 | 0.56 | 6.8e-14 | 6.1 | 6.0 | 1.5e-09 | 0.96 | 0.00 | 1.00 | FALSE |
25 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DOT1L | 0.08 | 0.12 | enet | 8 | 0.10 | 2.5e-11 | -5.6 | -5.7 | 1.2e-08 | 0.00 | 0.01 | 0.99 | TRUE |
26 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | WDR18 | 0.23 | 0.13 | lasso | 9 | 0.24 | 5.3e-14 | 6.1 | 5.6 | 2.0e-08 | 0.86 | 0.00 | 1.00 | FALSE |
27 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | DOT1L | 0.09 | 0.08 | blup | 60 | 0.07 | 4.1e-04 | 5.2 | -5.7 | 1.3e-08 | -0.02 | 0.05 | 0.89 | FALSE |
28 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | WDR18 | 0.38 | 0.13 | lasso | 4 | 0.16 | 5.5e-07 | 6.1 | 6.3 | 2.4e-10 | 0.95 | 0.00 | 1.00 | FALSE |