Best TWAS P=3.94e-32 · Best GWAS P=9.37e-152 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | AKAP11 | 0.16 | 0.20 | lasso | 4 | 0.19 | 3.6e-23 | -7.6 | 7.7 | 1.5e-14 | -0.42 | 1.00 | 0.00 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | DNAJC15 | 0.60 | 0.72 | lasso | 2 | 0.72 | 1.6e-125 | -5.5 | 5.5 | 4.6e-08 | 0.00 | 1.00 | 0.00 | FALSE |
3 | GTEx | Adipose Subcutaneous | DNAJC15 | 0.45 | 0.35 | lasso | 3 | 0.39 | 2.2e-33 | -5.5 | 5.2 | 1.5e-07 | 0.02 | 1.00 | 0.00 | FALSE |
4 | GTEx | Adrenal Gland | RGCC | 0.21 | 0.00 | lasso | 5 | 0.02 | 6.7e-02 | -7.8 | 7.5 | 8.4e-14 | -0.04 | 0.01 | 0.82 | TRUE |
5 | GTEx | Adrenal Gland | DNAJC15 | 0.45 | 0.53 | lasso | 3 | 0.52 | 1.2e-21 | -5.5 | 5.4 | 5.3e-08 | 0.00 | 1.00 | 0.00 | FALSE |
6 | GTEx | Artery Aorta | AKAP11 | 0.26 | 0.09 | lasso | 11 | 0.11 | 7.7e-07 | -6.3 | 6.5 | 8.1e-11 | -0.34 | 0.58 | 0.07 | FALSE |
7 | GTEx | Artery Aorta | DNAJC15 | 0.59 | 0.57 | lasso | 7 | 0.58 | 2.4e-38 | -5.5 | 5.2 | 2.0e-07 | 0.00 | 1.00 | 0.00 | FALSE |
8 | GTEx | Artery Coronary | DNAJC15 | 0.47 | 0.45 | lasso | 4 | 0.45 | 1.2e-16 | -5.5 | 5.4 | 7.2e-08 | 0.01 | 1.00 | 0.00 | FALSE |
9 | GTEx | Artery Tibial | AKAP11 | 0.17 | 0.11 | lasso | 4 | 0.14 | 4.3e-11 | -8.5 | 8.5 | 1.3e-17 | -0.40 | 1.00 | 0.00 | FALSE |
10 | GTEx | Brain Cerebellar Hemisphere | AKAP11 | 0.21 | 0.20 | lasso | 6 | 0.19 | 1.6e-05 | -8.3 | 8.5 | 2.7e-17 | -0.42 | 0.24 | 0.35 | FALSE |
11 | GTEx | Brain Cerebellum | AKAP11 | 0.30 | 0.29 | enet | 15 | 0.30 | 2.1e-09 | -7.6 | 8.9 | 7.2e-19 | -0.45 | 0.99 | 0.00 | TRUE |
12 | GTEx | Brain Cerebellum | DNAJC15 | 0.52 | 0.42 | enet | 6 | 0.46 | 3.4e-15 | -5.5 | 5.1 | 3.1e-07 | 0.01 | 1.00 | 0.00 | FALSE |
13 | GTEx | Brain Hippocampus | DNAJC15 | 0.54 | 0.37 | lasso | 7 | 0.41 | 7.8e-11 | -5.5 | 5.2 | 2.4e-07 | 0.01 | 0.96 | 0.00 | FALSE |
14 | GTEx | Brain Hypothalamus | DNAJC15 | 0.31 | 0.29 | lasso | 3 | 0.23 | 3.9e-06 | -5.1 | 5.1 | 2.8e-07 | 0.01 | 0.72 | 0.02 | FALSE |
15 | GTEx | Brain Nucleus accumbens basal ganglia | DNAJC15 | 0.46 | 0.32 | lasso | 8 | 0.37 | 6.8e-11 | -5.5 | 5.3 | 1.2e-07 | 0.00 | 0.98 | 0.00 | FALSE |
16 | GTEx | Breast Mammary Tissue (Male) | DNAJC15 | 0.61 | 0.51 | lasso | 5 | 0.49 | 5.0e-13 | -5.5 | 5.3 | 1.1e-07 | 0.00 | 0.98 | 0.00 | FALSE |
17 | GTEx | Cells EBV-transformed lymphocytes | DNAJC15 | 0.53 | 0.52 | lasso | 5 | 0.50 | 1.1e-18 | -5.5 | 5.4 | 5.5e-08 | 0.01 | 1.00 | 0.00 | FALSE |
18 | GTEx | Cells Transformed fibroblasts | DNAJC15 | 0.45 | 0.52 | lasso | 6 | 0.53 | 2.3e-46 | -5.5 | 5.6 | 2.2e-08 | 0.00 | 1.00 | 0.00 | FALSE |
19 | GTEx | Colon Sigmoid | AKAP11 | 0.21 | 0.06 | lasso | 4 | 0.09 | 4.0e-04 | 3.3 | 5.8 | 6.2e-09 | -0.52 | 0.13 | 0.17 | FALSE |
20 | GTEx | Colon Sigmoid | RGCC | 0.21 | -0.01 | enet | 26 | 0.02 | 6.5e-02 | 4.4 | 7.4 | 1.0e-13 | -0.03 | 0.05 | 0.26 | TRUE |
21 | GTEx | Colon Sigmoid | DNAJC15 | 0.71 | 0.60 | lasso | 8 | 0.61 | 1.3e-26 | -5.5 | 5.2 | 2.4e-07 | 0.01 | 1.00 | 0.00 | FALSE |
22 | GTEx | Colon Transverse | DNAJC15 | 0.46 | 0.44 | lasso | 5 | 0.43 | 6.3e-22 | -5.5 | 5.4 | 6.4e-08 | 0.00 | 1.00 | 0.00 | FALSE |
23 | GTEx | Esophagus Gastroesophageal Junction | AKAP11 | 0.17 | -0.01 | enet | 21 | -0.01 | 7.0e-01 | -8.3 | 5.6 | 2.5e-08 | -0.42 | 0.10 | 0.11 | TRUE |
24 | GTEx | Esophagus Mucosa | AKAP11 | 0.25 | 0.18 | lasso | 9 | 0.17 | 1.6e-11 | -7.9 | 9.5 | 2.2e-21 | -0.53 | 1.00 | 0.00 | FALSE |
25 | GTEx | Esophagus Mucosa | DNAJC15 | 0.56 | 0.54 | lasso | 5 | 0.57 | 1.1e-45 | -5.5 | 5.4 | 7.1e-08 | 0.00 | 1.00 | 0.00 | FALSE |
26 | GTEx | Esophagus Muscularis | AKAP11 | 0.23 | 0.19 | lasso | 4 | 0.19 | 2.1e-11 | -7.7 | 7.9 | 2.5e-15 | -0.43 | 1.00 | 0.00 | FALSE |
27 | GTEx | Esophagus Muscularis | DNAJC15 | 0.43 | 0.44 | lasso | 8 | 0.46 | 4.5e-31 | -5.5 | 5.3 | 9.1e-08 | 0.01 | 1.00 | 0.00 | FALSE |
28 | GTEx | Heart Left Ventricle | DNAJC15 | 0.32 | 0.30 | lasso | 7 | 0.31 | 6.4e-17 | -5.5 | 5.1 | 2.8e-07 | 0.01 | 1.00 | 0.00 | FALSE |
29 | GTEx | Liver | DNAJC15 | 0.64 | 0.48 | lasso | 10 | 0.53 | 2.6e-17 | -5.5 | 5.3 | 1.3e-07 | 0.01 | 1.00 | 0.00 | FALSE |
30 | GTEx | Lung | AKAP11 | 0.08 | 0.00 | lasso | 2 | 0.02 | 1.8e-02 | 6.9 | 9.0 | 2.9e-19 | -0.13 | 0.07 | 0.15 | TRUE |
31 | GTEx | Lung | DNAJC15 | 0.47 | 0.60 | lasso | 3 | 0.60 | 2.5e-57 | -5.5 | 5.5 | 4.6e-08 | 0.00 | 1.00 | 0.00 | FALSE |
32 | GTEx | Muscle Skeletal | AKAP11 | 0.15 | 0.10 | lasso | 8 | 0.10 | 2.4e-10 | -8.3 | -7.6 | 4.0e-14 | 0.37 | 1.00 | 0.00 | FALSE |
33 | GTEx | Nerve Tibial | AKAP11 | 0.12 | 0.00 | enet | 19 | 0.01 | 5.1e-02 | 11.1 | 9.3 | 1.1e-20 | -0.37 | 0.36 | 0.04 | TRUE |
34 | GTEx | Pancreas | DNAJC15 | 0.56 | 0.52 | lasso | 7 | 0.53 | 6.1e-26 | -5.5 | 5.7 | 1.6e-08 | 0.01 | 1.00 | 0.00 | FALSE |
35 | GTEx | Pituitary | DNAJC15 | 0.68 | 0.55 | lasso | 4 | 0.53 | 1.5e-15 | -5.4 | 5.5 | 5.1e-08 | 0.00 | 1.00 | 0.00 | FALSE |
36 | GTEx | Skin Not Sun Exposed Suprapubic | AKAP11 | 0.14 | 0.00 | enet | 32 | 0.00 | 4.1e-01 | 2.3 | 7.2 | 6.4e-13 | -0.36 | 0.14 | 0.12 | FALSE |
37 | GTEx | Skin Not Sun Exposed Suprapubic | DNAJC15 | 0.46 | 0.50 | lasso | 5 | 0.50 | 5.6e-31 | -5.5 | 5.3 | 1.5e-07 | 0.00 | 1.00 | 0.00 | FALSE |
38 | GTEx | Skin Sun Exposed Lower leg | AKAP11 | 0.06 | 0.05 | lasso | 3 | 0.04 | 4.6e-04 | -8.3 | 7.8 | 5.4e-15 | -0.40 | 0.82 | 0.03 | FALSE |
39 | GTEx | Skin Sun Exposed Lower leg | RGCC | 0.08 | 0.01 | enet | 18 | 0.03 | 1.5e-03 | -3.5 | 5.7 | 1.1e-08 | -0.03 | 0.16 | 0.04 | FALSE |
40 | GTEx | Spleen | DNAJC15 | 0.71 | 0.56 | enet | 20 | 0.63 | 2.3e-20 | -5.5 | 5.2 | 2.3e-07 | 0.00 | 1.00 | 0.00 | FALSE |
41 | GTEx | Testis | AKAP11 | 0.15 | 0.03 | enet | 13 | 0.09 | 6.4e-05 | 12.2 | 11.6 | 7.1e-31 | -0.43 | 0.24 | 0.23 | TRUE |
42 | GTEx | Testis | DNAJC15 | 0.43 | 0.38 | lasso | 3 | 0.36 | 1.3e-16 | -5.5 | 5.2 | 1.6e-07 | 0.00 | 1.00 | 0.00 | FALSE |
43 | GTEx | Thyroid | DNAJC15 | 0.43 | 0.35 | lasso | 9 | 0.35 | 5.6e-28 | -5.5 | 5.6 | 2.5e-08 | 0.00 | 1.00 | 0.00 | FALSE |
44 | GTEx | Whole Blood | DNAJC15 | 0.16 | 0.15 | lasso | 4 | 0.14 | 4.2e-13 | -5.5 | 5.4 | 8.1e-08 | 0.01 | 1.00 | 0.00 | FALSE |
45 | METSIM | Adipose | AKAP11 | 0.03 | 0.01 | lasso | 5 | 0.01 | 3.7e-02 | -7.6 | 7.2 | 5.4e-13 | -0.39 | 0.35 | 0.12 | FALSE |
46 | METSIM | Adipose | DNAJC15 | 0.28 | 0.32 | lasso | 5 | 0.32 | 6.9e-49 | -5.4 | 5.2 | 1.7e-07 | 0.00 | 1.00 | 0.00 | FALSE |
47 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | DNAJC15 | 0.09 | 0.07 | lasso | 2 | 0.06 | 1.4e-05 | -5.4 | 5.5 | 4.6e-08 | 0.00 | 0.00 | 1.00 | FALSE |
48 | The Cancer Genome Atlas | Breast Invasive Carcinoma | AKAP11 | 0.05 | 0.01 | enet | 18 | 0.03 | 3.9e-06 | -7.9 | 5.2 | 2.3e-07 | -0.28 | 0.15 | 0.03 | TRUE |
49 | The Cancer Genome Atlas | Breast Invasive Carcinoma | DNAJC15 | 0.18 | 0.28 | enet | 13 | 0.29 | 1.3e-60 | -5.5 | 5.5 | 4.1e-08 | 0.00 | 0.00 | 1.00 | FALSE |
50 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | DNAJC15 | 0.08 | 0.10 | lasso | 1 | 0.07 | 2.0e-04 | -5.5 | 5.5 | 3.3e-08 | 0.00 | 0.01 | 0.99 | FALSE |
51 | The Cancer Genome Atlas | Colon Adenocarcinoma | TNFSF11 | 0.14 | 0.01 | blup | 60 | 0.03 | 4.5e-03 | -5.0 | 5.9 | 3.3e-09 | -0.20 | 0.02 | 0.06 | FALSE |
52 | The Cancer Genome Atlas | Glioblastoma Multiforme | DNAJC15 | 0.40 | 0.45 | lasso | 8 | 0.44 | 1.0e-14 | -5.5 | 5.6 | 2.3e-08 | 0.00 | 0.01 | 0.99 | FALSE |
53 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | DNAJC15 | 0.24 | 0.29 | lasso | 7 | 0.29 | 2.4e-33 | -5.5 | 5.4 | 6.4e-08 | 0.01 | 0.00 | 1.00 | FALSE |
54 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DNAJC15 | 0.32 | 0.37 | lasso | 4 | 0.39 | 1.8e-46 | -5.4 | 5.4 | 5.7e-08 | 0.00 | 0.00 | 1.00 | FALSE |
55 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | DNAJC15 | 0.38 | 0.21 | blup | 92 | 0.31 | 2.3e-18 | -5.5 | 5.4 | 7.9e-08 | 0.00 | 0.00 | 1.00 | FALSE |
56 | The Cancer Genome Atlas | Brain Lower Grade Glioma | AKAP11 | 0.03 | 0.00 | blup | 85 | 0.02 | 5.0e-03 | -7.9 | 8.5 | 1.6e-17 | -0.41 | 0.03 | 0.03 | FALSE |
57 | The Cancer Genome Atlas | Brain Lower Grade Glioma | DNAJC15 | 0.32 | 0.38 | lasso | 5 | 0.46 | 8.8e-58 | -5.5 | 5.3 | 9.5e-08 | 0.00 | 0.00 | 1.00 | FALSE |
58 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | DNAJC15 | 0.36 | 0.35 | lasso | 4 | 0.34 | 1.4e-16 | -5.4 | 5.4 | 5.3e-08 | 0.00 | 0.00 | 1.00 | FALSE |
59 | The Cancer Genome Atlas | Lung Adenocarcinoma | DNAJC15 | 0.24 | 0.27 | enet | 12 | 0.27 | 2.0e-31 | -5.5 | 5.6 | 1.8e-08 | 0.00 | 0.00 | 1.00 | FALSE |
60 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | AKAP11 | 0.04 | 0.05 | lasso | 3 | 0.04 | 7.2e-06 | -9.9 | 10.1 | 3.9e-24 | -0.45 | 0.76 | 0.18 | FALSE |
61 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | DNAJC15 | 0.19 | 0.24 | lasso | 3 | 0.24 | 1.3e-26 | -5.4 | 5.5 | 4.3e-08 | 0.00 | 0.01 | 0.99 | FALSE |
62 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | AKAP11 | 0.04 | 0.00 | blup | 85 | 0.02 | 2.1e-02 | -8.4 | 11.8 | 3.9e-32 | -0.50 | 0.04 | 0.35 | TRUE |
63 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | DNAJC15 | 0.10 | 0.04 | blup | 92 | 0.04 | 7.8e-04 | -5.4 | 5.4 | 5.8e-08 | -0.01 | 0.01 | 0.94 | FALSE |
64 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | DNAJC15 | 0.29 | 0.33 | lasso | 4 | 0.35 | 1.3e-15 | -5.5 | 5.7 | 1.1e-08 | 0.01 | 0.01 | 0.99 | FALSE |
65 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | DNAJC15 | 0.32 | 0.28 | lasso | 7 | 0.31 | 4.5e-13 | -5.5 | 5.5 | 4.3e-08 | 0.01 | 0.01 | 0.98 | FALSE |
66 | The Cancer Genome Atlas | Prostate Adenocarcinoma | DNAJC15 | 0.17 | 0.21 | lasso | 4 | 0.21 | 4.0e-21 | -5.5 | 5.6 | 2.6e-08 | 0.00 | 0.00 | 1.00 | FALSE |
67 | The Cancer Genome Atlas | Rectum Adenocarcinoma | DNAJC15 | 0.38 | 0.28 | enet | 9 | 0.32 | 3.5e-08 | -5.5 | 6.0 | 2.2e-09 | 0.00 | 0.01 | 0.98 | TRUE |
68 | The Cancer Genome Atlas | Soft Tissue Sarcoma | DNAJC15 | 0.18 | 0.16 | lasso | 3 | 0.15 | 5.9e-09 | -5.5 | 5.5 | 4.0e-08 | 0.01 | 0.00 | 1.00 | FALSE |
69 | The Cancer Genome Atlas | Thyroid Carcinoma | AKAP11 | 0.07 | 0.09 | lasso | 3 | 0.08 | 3.7e-08 | -7.6 | 7.6 | 3.3e-14 | -0.41 | 1.00 | 0.00 | FALSE |
70 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | DNAJC15 | 0.16 | 0.06 | blup | 92 | 0.10 | 1.0e-03 | -5.4 | 5.2 | 1.9e-07 | 0.00 | 0.02 | 0.88 | FALSE |