Best TWAS P=1.3e-09 · Best GWAS P=1.44e-07 conditioned to 0.029
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Aorta | ZBTB45 | 0.12 | 0.04 | lasso | 7 | 0.08 | 5.2e-05 | 4.3 | -5.3 | 1.2e-07 | 0.59 | 0.08 | 0.85 | FALSE |
2 | GTEx | Brain Cerebellum | ZNF584 | 0.24 | 0.10 | lasso | 4 | 0.12 | 2.0e-04 | -4.9 | -6.0 | 1.9e-09 | 0.86 | 0.02 | 0.77 | FALSE |
3 | GTEx | Brain Cortex | ZNF584 | 0.30 | 0.21 | lasso | 12 | 0.15 | 6.0e-05 | 5.0 | -5.4 | 7.4e-08 | 0.42 | 0.05 | 0.87 | FALSE |
4 | GTEx | Breast Mammary Tissue | RPL23AP79 | 0.16 | 0.12 | lasso | 3 | 0.13 | 3.6e-07 | 4.7 | 5.6 | 2.8e-08 | -0.28 | 0.05 | 0.91 | FALSE |
5 | GTEx | Breast Mammary Tissue (Female) | RPL23AP79 | 0.14 | 0.07 | enet | 6 | 0.12 | 1.4e-04 | 3.7 | 5.2 | 2.3e-07 | -0.17 | 0.04 | 0.30 | FALSE |
6 | GTEx | Cells Transformed fibroblasts | CTD-2619J13.14 | 0.07 | 0.01 | lasso | 2 | 0.03 | 4.6e-03 | -4.9 | -5.9 | 3.1e-09 | 0.86 | 0.04 | 0.79 | FALSE |
7 | GTEx | Colon Sigmoid | AC016629.8 | 0.19 | 0.04 | lasso | 6 | 0.04 | 2.0e-02 | 4.7 | -5.9 | 4.2e-09 | 0.65 | 0.02 | 0.65 | FALSE |
8 | GTEx | Pancreas | RPL23AP79 | 0.13 | 0.04 | enet | 18 | 0.04 | 6.3e-03 | 4.8 | 5.2 | 2.6e-07 | -0.30 | 0.05 | 0.83 | FALSE |
9 | GTEx | Skin Not Sun Exposed Suprapubic | CTD-2619J13.14 | 0.14 | 0.03 | lasso | 3 | 0.02 | 1.9e-02 | 5.0 | 6.1 | 1.3e-09 | -0.57 | 0.03 | 0.78 | TRUE |
10 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ZBTB45 | 0.02 | 0.01 | enet | 10 | 0.01 | 1.9e-03 | 4.7 | 5.5 | 3.2e-08 | -0.43 | 0.01 | 0.42 | FALSE |
11 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | MZF1 | 0.07 | 0.04 | lasso | 3 | 0.04 | 1.5e-05 | 4.7 | -5.2 | 1.6e-07 | 0.50 | 0.00 | 0.94 | FALSE |
12 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ZNF584 | 0.09 | 0.06 | enet | 10 | 0.07 | 1.1e-08 | -5.3 | -5.5 | 4.1e-08 | 0.85 | 0.00 | 0.99 | FALSE |
13 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | ZNF324B | 0.10 | 0.08 | blup | 45 | 0.09 | 6.0e-05 | 4.7 | 5.2 | 2.4e-07 | -0.46 | 0.05 | 0.86 | FALSE |
14 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | ZNF584 | 0.19 | 0.13 | lasso | 7 | 0.13 | 4.9e-06 | 5.0 | -5.4 | 6.0e-08 | 0.51 | 0.03 | 0.92 | FALSE |