TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Hypothyroidism (self reported)
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chr19:4,118,871-5,529,588
Best TWAS P=9.98e-13 · Best GWAS P=1.45e-23 conditioned to 4.83e-09
4.2M
4.4M
4.6M
4.8M
5M
5.2M
5.4M
5.6M
0
5
10
15
20
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
ROSMAP
Brain Pre-frontal Cortex
TICAM1
0.07
0.02
lasso
5
0.04
1.2e-05
8.7
7.1
1.0e-12
0.81
0.01
0.99
TRUE
2
The Cancer Genome Atlas
Head and Neck Squamous Cell Carcinoma
FEM1A
0.06
0.00
blup
42
0.03
1.4e-04
8.1
-6.3
3.9e-10
-0.53
0.01
0.43
TRUE
5
The Cancer Genome Atlas
Thyroid Carcinoma
TICAM1
0.07
0.04
blup
54
0.06
1.6e-06
8.1
6.9
4.6e-12
0.78
0.01
0.99
FALSE
3
The Cancer Genome Atlas
Pancreatic Adenocarcinoma
FEM1A
0.10
0.10
lasso
3
0.08
4.6e-04
-6.8
-6.7
1.8e-11
-0.66
0.03
0.46
FALSE
4
The Cancer Genome Atlas
Prostate Adenocarcinoma
FEM1A
0.03
0.01
enet
6
0.02
5.0e-03
-4.0
-6.4
1.6e-10
-0.73
0.05
0.36
FALSE