Best TWAS P=3.61e-08 · Best GWAS P=6.2e-08 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | MORC2-AS1 | 0.14 | 0.12 | lasso | 4 | 0.11 | 3.2e-09 | 5.4 | -5.4 | 8.1e-08 | -1.00 | 0.01 | 0.99 | FALSE |
2 | GTEx | Artery Aorta | MORC2-AS1 | 0.16 | 0.05 | lasso | 2 | 0.02 | 2.3e-02 | 5.4 | -5.3 | 1.0e-07 | -0.99 | 0.01 | 0.98 | FALSE |
3 | GTEx | Artery Tibial | MORC2-AS1 | 0.17 | 0.09 | lasso | 4 | 0.07 | 5.2e-06 | 5.4 | -5.4 | 5.3e-08 | -1.00 | 0.01 | 0.99 | FALSE |
4 | GTEx | Brain Caudate basal ganglia | EIF4HP2 | 0.38 | 0.20 | lasso | 6 | 0.10 | 6.5e-04 | 5.1 | -5.3 | 9.3e-08 | -0.98 | 0.02 | 0.98 | FALSE |
5 | GTEx | Brain Cerebellar Hemisphere | EIF4HP2 | 0.28 | 0.18 | enet | 18 | 0.17 | 4.6e-05 | 5.1 | -5.3 | 1.2e-07 | -0.96 | 0.02 | 0.94 | FALSE |
6 | GTEx | Heart Left Ventricle | MORC2-AS1 | 0.12 | 0.08 | lasso | 3 | 0.06 | 3.2e-04 | 5.4 | -5.3 | 1.4e-07 | -0.99 | 0.01 | 0.98 | FALSE |
7 | GTEx | Lung | MORC2-AS1 | 0.12 | 0.09 | lasso | 6 | 0.08 | 8.3e-07 | 5.4 | -5.2 | 2.2e-07 | -0.96 | 0.01 | 0.99 | FALSE |
8 | GTEx | Muscle Skeletal | MORC2-AS1 | 0.08 | 0.04 | enet | 17 | 0.05 | 5.3e-06 | 5.4 | -5.1 | 2.8e-07 | -0.91 | 0.01 | 0.98 | FALSE |
9 | GTEx | Nerve Tibial | MORC2-AS1 | 0.25 | 0.20 | lasso | 8 | 0.19 | 2.0e-13 | 5.4 | -5.4 | 6.3e-08 | -1.00 | 0.01 | 0.99 | FALSE |
10 | GTEx | Skin Not Sun Exposed Suprapubic | MORC2-AS1 | 0.19 | 0.09 | lasso | 3 | 0.06 | 2.2e-04 | 5.4 | -5.4 | 8.0e-08 | -0.99 | 0.01 | 0.98 | FALSE |
11 | GTEx | Skin Sun Exposed Lower leg | MORC2-AS1 | 0.13 | 0.07 | lasso | 5 | 0.09 | 5.1e-08 | 5.4 | -5.4 | 7.4e-08 | -0.98 | 0.01 | 0.99 | FALSE |
12 | GTEx | Thyroid | MORC2-AS1 | 0.16 | 0.08 | enet | 20 | 0.13 | 5.8e-10 | 5.0 | -5.4 | 7.7e-08 | -0.94 | 0.03 | 0.97 | FALSE |
13 | METSIM | Adipose | MORC2 | 0.04 | 0.00 | bslmm | 396 | 0.01 | 8.8e-03 | 4.9 | 5.2 | 1.7e-07 | 0.64 | 0.03 | 0.59 | FALSE |
14 | YFS | Blood | OSBP2 | 0.04 | 0.02 | lasso | 4 | 0.02 | 9.7e-07 | 5.2 | -5.1 | 2.9e-07 | -0.88 | 0.03 | 0.97 | FALSE |
15 | The Cancer Genome Atlas | Breast Invasive Carcinoma | C22orf27 | 0.05 | 0.08 | lasso | 3 | 0.07 | 8.9e-15 | 5.4 | -5.4 | 6.3e-08 | -1.00 | 0.01 | 0.99 | FALSE |
16 | The Cancer Genome Atlas | Colon Adenocarcinoma | C22orf27 | 0.07 | 0.06 | lasso | 2 | 0.05 | 5.0e-04 | 5.1 | -5.4 | 8.0e-08 | -0.97 | 0.01 | 0.98 | FALSE |
17 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | C22orf27 | 0.09 | 0.03 | blup | 24 | 0.04 | 6.4e-05 | 5.1 | -5.2 | 2.2e-07 | -0.94 | 0.01 | 0.94 | FALSE |
18 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | C22orf27 | 0.24 | 0.16 | enet | 11 | 0.17 | 2.6e-18 | 5.4 | -5.4 | 6.2e-08 | -0.96 | 0.01 | 0.99 | FALSE |
19 | The Cancer Genome Atlas | Brain Lower Grade Glioma | C22orf27 | 0.09 | 0.07 | blup | 24 | 0.08 | 6.9e-09 | 5.4 | -5.4 | 5.5e-08 | -0.95 | 0.01 | 0.99 | FALSE |
20 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | C22orf27 | 0.23 | 0.13 | blup | 24 | 0.14 | 3.9e-07 | 5.4 | -5.3 | 1.1e-07 | -0.94 | 0.01 | 0.99 | FALSE |
21 | The Cancer Genome Atlas | Lung Adenocarcinoma | C22orf27 | 0.08 | 0.07 | blup | 24 | 0.10 | 1.5e-11 | 5.4 | -5.3 | 1.3e-07 | -0.93 | 0.01 | 0.99 | FALSE |
22 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | C22orf27 | 0.06 | 0.04 | blup | 24 | 0.06 | 4.5e-07 | 5.1 | -5.1 | 2.7e-07 | -0.91 | 0.01 | 0.99 | FALSE |
23 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | C22orf27 | 0.12 | 0.15 | lasso | 3 | 0.14 | 2.3e-06 | 5.4 | -5.3 | 1.1e-07 | -1.00 | 0.01 | 0.98 | FALSE |
24 | The Cancer Genome Atlas | Prostate Adenocarcinoma | C22orf27 | 0.20 | 0.14 | blup | 24 | 0.15 | 1.9e-15 | 5.0 | -5.3 | 1.1e-07 | -0.95 | 0.01 | 0.99 | FALSE |
25 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | C22orf27 | 0.19 | 0.15 | lasso | 1 | 0.14 | 1.8e-04 | 5.1 | -5.1 | 2.7e-07 | -0.99 | 0.01 | 0.75 | FALSE |
26 | The Cancer Genome Atlas | Thyroid Carcinoma | C22orf27 | 0.26 | 0.21 | enet | 11 | 0.24 | 1.3e-22 | 5.4 | -5.5 | 3.6e-08 | -0.95 | 0.01 | 0.99 | TRUE |
27 | The Cancer Genome Atlas | Thyroid Carcinoma | MORC2 | 0.05 | 0.01 | blup | 30 | 0.03 | 3.3e-04 | 5.0 | 5.2 | 2.3e-07 | 0.88 | 0.01 | 0.68 | FALSE |