Best TWAS P=6.37e-08 · Best GWAS P=1.7e-17 conditioned to 1.2e-12
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | SLC22A1 | 0.03 | 0.00 | blup | 82 | 0.01 | 0.02450 | -4.3 | -5.4 | 6.7e-08 | -0.29 | 0.02 | 0.14 | TRUE |
| 2 | The Cancer Genome Atlas | Prostate Adenocarcinoma | LPA | 0.09 | 0.04 | blup | 61 | 0.03 | 0.00023 | 4.0 | -5.4 | 6.4e-08 | -0.03 | 0.04 | 0.70 | TRUE |