TWAS
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Usage
Models
Genes
Traits
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Traits
:
LDL Cholesterol
:
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chr1:54,527,647-56,375,280
Best TWAS P=6.3e-13 · Best GWAS P=1.93e-28 conditioned to 3.34e-22
54.5M
55M
55.5M
56M
0
5
10
15
20
25
30
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
GTEx
Stomach
USP24
0.14
0.01
lasso
5
0.00
2.0e-01
-4.900
7.2
6.3e-13
0.23
0.16
0.07
TRUE
4
METSIM
Adipose
PARS2
0.07
0.00
blup
537
0.02
2.3e-04
0.011
-6.3
2.5e-10
-0.14
0.18
0.07
FALSE
1
GTEx
Artery Aorta
USP24
0.20
0.04
enet
37
0.12
2.9e-07
-0.424
5.7
1.5e-08
0.19
0.84
0.01
FALSE
2
GTEx
Lung
USP24
0.16
0.03
lasso
15
0.04
5.6e-04
-7.620
5.2
2.1e-07
0.16
0.97
0.00
FALSE