TWAS
hub
About
Usage
Models
Genes
Traits
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Traits
:
Blood Red Count
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chr1:212,336,299-215,419,671
Best TWAS P=1.26e-09 · Best GWAS P=1.53e-47 conditioned to 4.16e-40
212.5M
213M
213.5M
214M
214.5M
215M
215.5M
0
10
20
30
40
50
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
GTEx
Thyroid
SMYD2
0.22
0.04
enet
34
0.11
6.2e-09
-5.02
-6.1
1.3e-09
-0.28
0.96
0.00
TRUE
1
GTEx
Adipose Subcutaneous
PTPN14
0.14
0.00
enet
20
0.06
5.8e-06
0.46
-6.0
1.7e-09
-0.01
0.15
0.04
TRUE
3
NTR
Blood
FLVCR1
0.03
0.02
enet
9
0.02
6.4e-08
-6.79
-5.5
3.2e-08
0.00
0.00
1.00
TRUE
4
The Cancer Genome Atlas
Testicular Germ Cell Tumors
LQK1
0.60
0.55
enet
15
0.57
1.9e-24
-4.35
5.2
2.3e-07
0.02
1.00
0.00
FALSE