Best TWAS P=1.26e-09 · Best GWAS P=1.53e-47 conditioned to 4.16e-40
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Adipose Subcutaneous | PTPN14 | 0.14 | 0.00 | enet | 20 | 0.06 | 5.8e-06 | 0.46 | -6.0 | 1.7e-09 | -0.01 | 0.15 | 0.04 | TRUE |
| 2 | GTEx | Thyroid | SMYD2 | 0.22 | 0.04 | enet | 34 | 0.11 | 6.2e-09 | -5.02 | -6.1 | 1.3e-09 | -0.28 | 0.96 | 0.00 | TRUE |
| 3 | NTR | Blood | FLVCR1 | 0.03 | 0.02 | enet | 9 | 0.02 | 6.4e-08 | -6.79 | -5.5 | 3.2e-08 | 0.00 | 0.00 | 1.00 | TRUE |
| 4 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | LQK1 | 0.60 | 0.55 | enet | 15 | 0.57 | 1.9e-24 | -4.35 | 5.2 | 2.3e-07 | 0.02 | 1.00 | 0.00 | FALSE |