Best TWAS P=5.27e-09 · Best GWAS P=1.79e-08 conditioned to 0.0022
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Brain Cortex | CTD-2020K17.3 | 0.31 | 0.17 | lasso | 10 | 0.18 | 1.0e-05 | 4.9 | 5.4 | 8.2e-08 | 0.36 | 0.03 | 0.77 | FALSE |
2 | GTEx | Breast Mammary Tissue | DCAKD | 0.16 | 0.13 | lasso | 7 | 0.13 | 2.9e-07 | 5.5 | -5.3 | 9.4e-08 | -0.59 | 0.04 | 0.96 | FALSE |
3 | GTEx | Breast Mammary Tissue (Male) | DCAKD | 0.36 | 0.29 | lasso | 8 | 0.33 | 1.4e-08 | 4.4 | -5.7 | 1.0e-08 | -0.58 | 0.08 | 0.89 | FALSE |
4 | GTEx | Esophagus Gastroesophageal Junction | DCAKD | 0.42 | 0.36 | lasso | 7 | 0.37 | 3.8e-14 | 5.5 | -5.2 | 2.0e-07 | -0.58 | 0.01 | 0.99 | FALSE |
5 | GTEx | Skin Not Sun Exposed Suprapubic | DCAKD | 0.30 | 0.21 | lasso | 6 | 0.20 | 5.0e-11 | 5.5 | -5.3 | 1.1e-07 | -0.58 | 0.01 | 0.99 | FALSE |
6 | GTEx | Whole Blood | DCAKD | 0.07 | 0.08 | lasso | 2 | 0.06 | 1.8e-06 | 4.3 | -5.2 | 1.6e-07 | -0.52 | 0.30 | 0.68 | FALSE |
7 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | LOC644172 | 0.08 | 0.00 | blup | 79 | 0.04 | 3.2e-04 | -3.8 | -5.8 | 5.3e-09 | -0.51 | 0.02 | 0.84 | TRUE |
8 | The Cancer Genome Atlas | Breast Invasive Carcinoma | C17orf46 | 0.04 | 0.02 | enet | 5 | 0.04 | 4.1e-08 | -3.7 | 5.4 | 5.5e-08 | 0.31 | 0.03 | 0.97 | FALSE |
9 | The Cancer Genome Atlas | Esophageal Carcinoma | LOC644172 | 0.19 | 0.12 | lasso | 3 | 0.05 | 8.2e-03 | 4.8 | -5.2 | 2.3e-07 | -0.42 | 0.02 | 0.24 | FALSE |
10 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | MGC57346 | 0.11 | 0.12 | lasso | 2 | 0.11 | 1.1e-04 | 4.4 | -5.4 | 8.4e-08 | -0.39 | 0.05 | 0.40 | FALSE |