Best TWAS P=5.31e-21 · Best GWAS P=1.15e-11 conditioned to 0.514
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | GOPC | 0.12 | 0.11 | lasso | 7 | 0.09 | 2.2e-11 | 5.3 | 6.0 | 2.4e-09 | 0.63 | 0.93 | 0.07 | FALSE |
2 | GTEx | Artery Aorta | GOPC | 0.11 | 0.09 | enet | 13 | 0.12 | 4.7e-07 | 6.0 | -6.4 | 1.2e-10 | -0.81 | 0.03 | 0.97 | FALSE |
3 | GTEx | Artery Tibial | GOPC | 0.11 | 0.08 | lasso | 4 | 0.09 | 9.0e-08 | 5.2 | -6.6 | 4.0e-11 | -0.81 | 0.06 | 0.94 | FALSE |
4 | GTEx | Artery Tibial | PLN | 0.09 | 0.05 | lasso | 2 | 0.03 | 2.5e-03 | 5.7 | 5.8 | 6.4e-09 | 0.01 | 0.02 | 0.97 | TRUE |
5 | GTEx | Breast Mammary Tissue | DCBLD1 | 0.10 | 0.02 | lasso | 4 | 0.03 | 1.1e-02 | 6.2 | -6.6 | 3.0e-11 | -0.82 | 0.02 | 0.85 | FALSE |
6 | GTEx | Breast Mammary Tissue (Male) | GOPC | 0.05 | 0.03 | enet | 7 | 0.05 | 2.2e-02 | 2.7 | -5.7 | 1.2e-08 | -0.77 | 0.02 | 0.68 | FALSE |
7 | GTEx | Muscle Skeletal | NUS1 | 0.09 | 0.04 | enet | 14 | 0.08 | 1.1e-08 | -5.2 | -6.8 | 1.2e-11 | -0.57 | 0.86 | 0.08 | FALSE |
8 | GTEx | Nerve Tibial | GOPC | 0.12 | 0.06 | enet | 17 | 0.06 | 3.7e-05 | 6.3 | -6.5 | 6.0e-11 | -0.91 | 0.02 | 0.98 | FALSE |
9 | GTEx | Thyroid | GOPC | 0.11 | 0.02 | enet | 23 | 0.02 | 1.6e-02 | 6.8 | -9.4 | 5.3e-21 | -0.66 | 0.01 | 0.98 | TRUE |
10 | GTEx | Thyroid | DCBLD1 | 0.27 | 0.22 | enet | 14 | 0.24 | 1.3e-18 | -4.2 | -5.4 | 7.5e-08 | -0.45 | 1.00 | 0.00 | FALSE |
11 | GTEx | Whole Blood | DCBLD1 | 0.16 | 0.09 | lasso | 7 | 0.09 | 7.7e-09 | -3.7 | 6.0 | 1.5e-09 | 0.56 | 0.87 | 0.13 | FALSE |
12 | NTR | Blood | DCBLD1 | 0.02 | 0.02 | lasso | 4 | 0.02 | 1.1e-07 | -5.3 | 5.3 | 1.0e-07 | 0.41 | 0.94 | 0.06 | FALSE |
13 | ROSMAP | Brain Pre-frontal Cortex | GOPC | 0.13 | 0.16 | enet | 21 | 0.16 | 1.5e-19 | 4.7 | 6.6 | 3.7e-11 | 0.78 | 0.43 | 0.57 | FALSE |
14 | YFS | Blood | DCBLD1 | 0.13 | 0.13 | enet | 26 | 0.14 | 2.2e-44 | -5.3 | 5.2 | 1.8e-07 | 0.41 | 0.95 | 0.05 | FALSE |
15 | The Cancer Genome Atlas | Breast Invasive Carcinoma | GOPC | 0.02 | 0.02 | lasso | 1 | 0.02 | 2.1e-04 | 6.0 | -6.0 | 2.0e-09 | -0.83 | 0.13 | 0.78 | FALSE |
16 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ROS1 | 0.03 | 0.03 | enet | 9 | 0.03 | 3.0e-06 | -5.2 | 5.5 | 4.7e-08 | 0.31 | 0.02 | 0.98 | FALSE |