Best TWAS P=3.77e-08 · Best GWAS P=1.94e-07 conditioned to 0.276
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | PMS2P3 | 0.15 | 0.12 | lasso | 3 | 0.10 | 9.8e-09 | -5.2 | -5.1 | 2.8e-07 | 0.99 | 0 | 1.00 | FALSE |
2 | GTEx | Brain Cerebellar Hemisphere | TRIM73 | 0.35 | 0.28 | enet | 25 | 0.25 | 3.6e-07 | -4.9 | -5.5 | 3.8e-08 | 0.84 | 0 | 0.99 | TRUE |
3 | GTEx | Brain Cerebellum | TRIM73 | 0.24 | 0.06 | enet | 12 | 0.14 | 8.2e-05 | -5.2 | -5.3 | 1.1e-07 | 0.85 | 0 | 0.96 | FALSE |
4 | GTEx | Cells Transformed fibroblasts | PMS2P3 | 0.23 | 0.15 | lasso | 6 | 0.15 | 1.4e-11 | -5.2 | -5.3 | 9.8e-08 | 0.97 | 0 | 1.00 | FALSE |
5 | GTEx | Cells Transformed fibroblasts | STAG3L1 | 0.22 | 0.17 | lasso | 4 | 0.18 | 2.6e-13 | -4.9 | -5.1 | 3.1e-07 | 0.94 | 0 | 0.99 | FALSE |
6 | GTEx | Colon Sigmoid | STAG3L1 | 0.30 | 0.18 | lasso | 4 | 0.18 | 8.5e-07 | -4.9 | -5.1 | 2.9e-07 | 0.94 | 0 | 0.98 | FALSE |
7 | GTEx | Esophagus Muscularis | TRIM73 | 0.12 | 0.07 | lasso | 2 | 0.05 | 3.5e-04 | -5.2 | -5.2 | 1.7e-07 | 1.00 | 0 | 0.99 | FALSE |
8 | GTEx | Nerve Tibial | PMS2P3 | 0.29 | 0.13 | enet | 4 | 0.18 | 1.1e-12 | -4.8 | -5.2 | 2.5e-07 | 0.90 | 0 | 1.00 | FALSE |
9 | GTEx | Stomach | PMS2P3 | 0.16 | 0.07 | lasso | 5 | 0.09 | 3.7e-05 | -4.8 | -5.2 | 2.2e-07 | 0.94 | 0 | 0.99 | FALSE |
10 | METSIM | Adipose | TRIM73 | 0.11 | 0.11 | lasso | 5 | 0.12 | 8.6e-18 | -5.2 | -5.2 | 1.5e-07 | 0.97 | 0 | 1.00 | FALSE |
11 | ROSMAP | Brain Pre-frontal Cortex | POM121C | 0.36 | 0.26 | lasso | 7 | 0.27 | 2.8e-34 | -4.9 | -5.2 | 2.3e-07 | 0.95 | 0 | 1.00 | FALSE |
12 | ROSMAP | Brain Pre-frontal Cortex | PMS2P2 | 0.17 | 0.08 | enet | 8 | 0.08 | 6.0e-10 | -4.9 | -5.2 | 2.0e-07 | 0.95 | 0 | 1.00 | FALSE |
13 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | PMS2L3 | 0.23 | 0.14 | lasso | 2 | 0.14 | 1.3e-04 | -4.9 | -5.3 | 1.1e-07 | 0.94 | 0 | 0.63 | FALSE |