Best TWAS P=1.95e-14 · Best GWAS P=2.17e-13 conditioned to 0.183
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Visceral Omentum | DMWD | 0.11 | 0.13 | lasso | 2 | 0.16 | 7.3e-09 | 4.0 | 6.0 | 1.6e-09 | -0.85 | 0.03 | 0.97 | FALSE |
2 | GTEx | Artery Aorta | DMWD | 0.28 | 0.19 | lasso | 3 | 0.15 | 1.2e-08 | -7.1 | 6.9 | 4.0e-12 | -0.94 | 0.01 | 0.99 | FALSE |
3 | GTEx | Artery Tibial | DMPK | 0.12 | 0.03 | lasso | 4 | 0.03 | 3.1e-03 | 4.3 | 6.8 | 1.3e-11 | -0.70 | 0.03 | 0.94 | FALSE |
4 | GTEx | Artery Tibial | DMWD | 0.22 | 0.17 | lasso | 8 | 0.16 | 6.8e-13 | -7.1 | 7.3 | 2.7e-13 | -0.97 | 0.01 | 0.99 | FALSE |
5 | GTEx | Artery Tibial | AC074212.6 | 0.14 | 0.04 | lasso | 5 | 0.06 | 2.4e-05 | -7.3 | 7.7 | 1.9e-14 | -0.87 | 0.01 | 0.99 | TRUE |
6 | GTEx | Cells Transformed fibroblasts | DMPK | 0.10 | 0.07 | lasso | 6 | 0.07 | 1.0e-05 | 5.3 | 5.5 | 4.2e-08 | -0.43 | 0.89 | 0.02 | FALSE |
7 | GTEx | Cells Transformed fibroblasts | AC074212.6 | 0.07 | 0.05 | enet | 7 | 0.05 | 1.5e-04 | 5.4 | 5.3 | 1.2e-07 | -0.44 | 0.53 | 0.03 | FALSE |
8 | GTEx | Lung | DMPK | 0.10 | 0.05 | lasso | 3 | 0.05 | 5.4e-05 | 4.0 | 5.3 | 9.8e-08 | -0.77 | 0.03 | 0.96 | FALSE |
9 | GTEx | Muscle Skeletal | DMWD | 0.06 | 0.01 | lasso | 6 | 0.01 | 1.9e-02 | -7.1 | 6.9 | 5.8e-12 | -0.91 | 0.01 | 0.97 | FALSE |
10 | GTEx | Nerve Tibial | DMWD | 0.24 | 0.07 | lasso | 6 | 0.06 | 5.8e-05 | -7.1 | 6.0 | 1.5e-09 | -0.86 | 0.02 | 0.98 | FALSE |
11 | GTEx | Thyroid | DMPK | 0.13 | 0.11 | lasso | 2 | 0.12 | 1.3e-09 | 4.0 | 5.4 | 7.0e-08 | -0.78 | 0.16 | 0.84 | FALSE |
12 | GTEx | Thyroid | DMWD | 0.11 | 0.12 | lasso | 3 | 0.11 | 6.7e-09 | 4.1 | 5.8 | 5.1e-09 | -0.83 | 0.02 | 0.98 | FALSE |
13 | GTEx | Thyroid | AC074212.6 | 0.08 | 0.10 | lasso | 2 | 0.09 | 1.8e-07 | -7.1 | 7.0 | 1.9e-12 | -0.95 | 0.01 | 0.99 | FALSE |
14 | The Cancer Genome Atlas | Breast Invasive Carcinoma | DMWD | 0.01 | 0.00 | blup | 42 | 0.01 | 7.3e-03 | 3.9 | -7.1 | 1.3e-12 | 0.83 | 0.01 | 0.79 | FALSE |
15 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | SIX5 | 0.05 | 0.05 | lasso | 8 | 0.03 | 7.6e-03 | -7.1 | -6.9 | 4.4e-12 | 0.98 | 0.01 | 0.94 | FALSE |