Best TWAS P=3.53e-09 · Best GWAS P=5.23e-08 conditioned to 0.677
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | TRIOBP | 0.20 | 0.20 | bslmm | 501 | 0.21 | 4.3e-25 | 5.2 | -5.2 | 1.6e-07 | -0.95 | 0.01 | 0.99 | FALSE |
2 | GTEx | Adipose Subcutaneous | TRIOBP | 0.13 | 0.14 | lasso | 7 | 0.14 | 3.9e-11 | 5.4 | -5.5 | 4.0e-08 | -0.97 | 0.01 | 0.99 | FALSE |
3 | GTEx | Adipose Subcutaneous | GCAT | 0.16 | 0.12 | lasso | 5 | 0.12 | 9.2e-10 | 5.3 | 5.5 | 3.7e-08 | 0.92 | 0.01 | 0.99 | FALSE |
4 | GTEx | Adipose Visceral Omentum | TRIOBP | 0.16 | 0.14 | enet | 28 | 0.12 | 5.6e-07 | 5.4 | -5.5 | 3.9e-08 | -0.91 | 0.01 | 0.99 | FALSE |
5 | GTEx | Artery Aorta | TRIOBP | 0.13 | 0.10 | lasso | 8 | 0.11 | 1.1e-06 | 5.4 | -5.4 | 6.1e-08 | -0.97 | 0.01 | 0.99 | FALSE |
6 | GTEx | Artery Aorta | GCAT | 0.16 | 0.15 | lasso | 2 | 0.14 | 5.4e-08 | 5.4 | 5.4 | 6.8e-08 | 0.95 | 0.01 | 0.99 | FALSE |
7 | GTEx | Breast Mammary Tissue | TRIOBP | 0.11 | 0.10 | enet | 13 | 0.09 | 3.3e-05 | 5.4 | -5.3 | 1.1e-07 | -0.96 | 0.01 | 0.99 | FALSE |
8 | GTEx | Cells Transformed fibroblasts | TRIOBP | 0.08 | 0.03 | enet | 11 | 0.09 | 3.0e-07 | 5.2 | -5.1 | 2.7e-07 | -0.94 | 0.02 | 0.98 | FALSE |
9 | GTEx | Colon Sigmoid | TRIOBP | 0.28 | 0.22 | lasso | 6 | 0.22 | 2.7e-08 | 5.3 | -5.4 | 8.5e-08 | -0.90 | 0.01 | 0.99 | FALSE |
10 | GTEx | Esophagus Muscularis | GCAT | 0.11 | 0.12 | lasso | 3 | 0.12 | 1.1e-07 | 5.4 | 5.2 | 2.5e-07 | 0.93 | 0.02 | 0.98 | FALSE |
11 | GTEx | Heart Atrial Appendage | TRIOBP | 0.15 | 0.13 | lasso | 6 | 0.11 | 1.3e-05 | 5.2 | -5.4 | 8.5e-08 | -0.99 | 0.01 | 0.99 | FALSE |
12 | GTEx | Heart Left Ventricle | TRIOBP | 0.16 | 0.04 | lasso | 4 | 0.08 | 6.2e-05 | 5.2 | -5.3 | 1.2e-07 | -0.92 | 0.02 | 0.97 | FALSE |
13 | GTEx | Lung | TRIOBP | 0.16 | 0.10 | enet | 10 | 0.12 | 8.7e-10 | 5.2 | -5.2 | 1.9e-07 | -0.95 | 0.01 | 0.99 | FALSE |
14 | GTEx | Lung | GCAT | 0.10 | 0.09 | lasso | 2 | 0.07 | 9.7e-06 | 5.4 | 5.4 | 6.1e-08 | 0.95 | 0.01 | 0.99 | FALSE |
15 | GTEx | Nerve Tibial | TRIOBP | 0.20 | 0.18 | lasso | 7 | 0.22 | 9.1e-16 | 5.4 | -5.3 | 1.4e-07 | -0.95 | 0.01 | 0.99 | FALSE |
16 | GTEx | Pancreas | GCAT | 0.32 | 0.23 | lasso | 6 | 0.26 | 2.4e-11 | 5.0 | -5.3 | 9.9e-08 | -0.71 | 0.07 | 0.93 | FALSE |
17 | GTEx | Skin Not Sun Exposed Suprapubic | TRIOBP | 0.12 | 0.04 | lasso | 3 | 0.05 | 7.0e-04 | 4.9 | -5.3 | 8.8e-08 | -0.94 | 0.02 | 0.97 | FALSE |
18 | GTEx | Skin Sun Exposed Lower leg | TRIOBP | 0.06 | 0.06 | lasso | 4 | 0.06 | 1.7e-05 | 4.9 | -5.1 | 2.8e-07 | -0.90 | 0.03 | 0.96 | FALSE |
19 | GTEx | Stomach | TRIOBP | 0.10 | 0.03 | lasso | 5 | 0.03 | 1.9e-02 | 5.4 | -5.6 | 2.4e-08 | -0.98 | 0.02 | 0.92 | FALSE |
20 | GTEx | Whole Blood | TRIOBP | 0.18 | 0.05 | enet | 29 | 0.14 | 1.7e-12 | 5.4 | -5.9 | 4.7e-09 | -0.77 | 0.01 | 0.99 | FALSE |
21 | YFS | Blood | TRIOBP | 0.38 | 0.28 | bslmm | 488 | 0.39 | 3.0e-136 | 5.4 | -5.6 | 2.0e-08 | -0.83 | 0.01 | 0.99 | FALSE |
22 | The Cancer Genome Atlas | Breast Invasive Carcinoma | TRIOBP | 0.04 | 0.05 | enet | 16 | 0.06 | 3.0e-13 | 5.4 | -5.3 | 1.5e-07 | -0.91 | 0.01 | 0.99 | FALSE |
23 | The Cancer Genome Atlas | Colon Adenocarcinoma | GCAT | 0.09 | 0.08 | enet | 6 | 0.08 | 3.1e-05 | 5.3 | 5.9 | 3.7e-09 | 0.91 | 0.01 | 0.98 | FALSE |
24 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | TRIOBP | 0.11 | 0.09 | enet | 10 | 0.11 | 5.5e-12 | 4.9 | -5.9 | 3.5e-09 | -0.89 | 0.03 | 0.97 | TRUE |
25 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | GCAT | 0.13 | 0.03 | blup | 29 | 0.08 | 3.6e-05 | -4.0 | 5.3 | 1.0e-07 | 0.69 | 0.01 | 0.84 | FALSE |
26 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ANKRD54 | 0.05 | 0.01 | blup | 31 | 0.02 | 1.3e-03 | 5.3 | -5.3 | 1.1e-07 | -0.88 | 0.01 | 0.91 | FALSE |
27 | The Cancer Genome Atlas | Brain Lower Grade Glioma | TRIOBP | 0.08 | 0.07 | enet | 11 | 0.08 | 6.1e-09 | 4.1 | -5.1 | 2.6e-07 | -0.88 | 0.06 | 0.94 | FALSE |
28 | The Cancer Genome Atlas | Prostate Adenocarcinoma | TRIOBP | 0.07 | 0.04 | blup | 67 | 0.03 | 2.1e-04 | 4.4 | -5.4 | 5.3e-08 | -0.86 | 0.06 | 0.92 | FALSE |
29 | The Cancer Genome Atlas | Thyroid Carcinoma | GCAT | 0.02 | 0.03 | blup | 29 | 0.03 | 1.4e-03 | 5.4 | 5.7 | 1.6e-08 | 0.95 | 0.01 | 0.86 | FALSE |
30 | The Cancer Genome Atlas | Thyroid Carcinoma | TRIOBP | 0.22 | 0.25 | enet | 37 | 0.27 | 6.9e-26 | 5.4 | -5.1 | 2.8e-07 | -0.90 | 0.01 | 0.99 | FALSE |