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chr1:28,011,854-29,594,563

Best TWAS P=6.07e-09 · Best GWAS P=1.62e-08 conditioned to 0.0349

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
5	GTEx	Colon Transverse	SNHG12	0.11	-0.01	lasso	5	0.00	6.7e-01	5.3	-5.8	6.1e-09	-0.72	0.03	0.71	TRUE
1	GTEx	Artery Aorta	PHACTR4	0.26	0.27	lasso	8	0.21	8.7e-12	5.3	-5.7	1.5e-08	-0.96	0.03	0.97	FALSE
9	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	PHACTR4	0.02	0.02	enet	3	0.02	2.9e-03	5.4	-5.5	3.2e-08	-0.93	0.02	0.80	FALSE
6	GTEx	Spleen	SNHG3	0.15	0.09	lasso	6	0.07	6.8e-03	5.3	5.4	5.3e-08	0.91	0.04	0.78	FALSE
3	GTEx	Brain Cerebellum	PHACTR4	0.20	0.14	lasso	16	0.13	1.4e-04	5.4	-5.3	8.9e-08	-0.98	0.02	0.95	FALSE
2	GTEx	Artery Coronary	PHACTR4	0.12	0.20	lasso	2	0.18	1.0e-06	5.3	-5.3	9.8e-08	-0.97	0.03	0.96	FALSE
8	YFS	Blood	PHACTR4	0.14	0.28	bslmm	323	0.28	3.5e-92	5.5	-5.2	1.6e-07	-0.99	0.01	0.99	FALSE
4	GTEx	Brain Frontal Cortex BA9	PHACTR4	0.20	0.18	lasso	4	0.19	9.4e-06	4.8	-5.2	2.5e-07	-0.97	0.04	0.89	FALSE
7	NTR	Blood	PHACTR4	0.01	0.01	enet	8	0.01	2.6e-05	5.2	-5.1	2.8e-07	-0.79	0.02	0.97	FALSE