TWAS
hub
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Usage
Models
Genes
Traits
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Traits
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Pulse rate, automated reading
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chr1:25,615,377-26,988,026
Best TWAS P=2.04e-08 · Best GWAS P=1.78e-09 conditioned to 0.0276
25.6M
25.8M
26M
26.2M
26.4M
26.6M
26.8M
27M
0
2
4
6
8
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
SLC30A2
0.03
0.02
lasso
3
0.01
1.1e-02
-5.4
5.6
2.0e-08
-0.91
0.01
0.94
TRUE
4
The Cancer Genome Atlas
Rectum Adenocarcinoma
TRIM63
0.28
0.22
lasso
3
0.20
1.7e-05
-5.4
-5.5
3.8e-08
0.90
0.01
0.96
FALSE
2
The Cancer Genome Atlas
Bladder Urothelial Carcinoma
TRIM63
0.03
0.02
blup
33
0.02
4.6e-03
-4.0
-5.3
9.6e-08
0.91
0.02
0.76
FALSE
1
YFS
Blood
PAFAH2
0.06
0.04
enet
12
0.04
1.7e-14
-5.7
5.1
2.9e-07
-0.67
0.01
0.99
FALSE