TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Pulse rate, automated reading
:
←
→
chr5:171,876,084-173,289,036
Best TWAS P=1.2e-10 · Best GWAS P=1.2e-16 conditioned to 1.5e-10
171.8M
172M
172.2M
172.4M
172.6M
172.8M
173M
173.2M
0
5
10
15
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Ovarian Serous Cystadenocarcinoma
ATP6V0E1
0.08
0.00
blup
59
0.02
2.4e-02
-6.6
6.4
1.2e-10
-0.34
0.01
0.34
TRUE
3
The Cancer Genome Atlas
Liver Hepatocellular Carcinoma
BNIP1
0.11
0.03
blup
49
0.09
3.3e-05
2.5
-6.2
6.9e-10
0.19
0.04
0.90
TRUE
2
GTEx
Nerve Tibial
BNIP1
0.18
0.05
lasso
6
0.10
1.5e-07
2.5
-5.7
1.4e-08
0.20
0.74
0.24
FALSE
1
GTEx
Artery Tibial
BNIP1
0.18
0.08
lasso
5
0.13
2.1e-10
2.5
-5.6
2.0e-08
0.22
0.96
0.04
FALSE
5
The Cancer Genome Atlas
Stomach Adenocarcinoma
BNIP1
0.06
0.04
enet
6
0.01
3.0e-02
2.5
-5.2
1.8e-07
0.29
0.03
0.19
FALSE