TWAS
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Traits
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Traits
:
Comparative body size at age 10
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chr1:109,316,076-110,733,794
Best TWAS P=3.53e-10 · Best GWAS P=1.39e-08 conditioned to 0.472
109.4M
109.6M
109.8M
110M
110.2M
110.4M
110.6M
110.8M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
GTEx
Artery Tibial
ATXN7L2
0.23
0.03
enet
12
0.11
9.1e-09
-4.6
6.3
3.5e-10
-0.49
0.20
0.70
TRUE
5
The Cancer Genome Atlas
Esophageal Carcinoma
AMIGO1
0.24
0.08
blup
46
0.18
3.0e-06
2.9
5.5
4.5e-08
-0.71
0.06
0.55
TRUE
1
GTEx
Artery Aorta
SYPL2
0.35
0.23
lasso
4
0.27
2.6e-15
-4.6
5.4
6.9e-08
-0.45
0.23
0.75
FALSE
4
GTEx
Heart Atrial Appendage
SYPL2
0.37
0.13
lasso
7
0.27
1.8e-12
-4.6
5.3
8.6e-08
-0.48
0.24
0.74
FALSE
3
GTEx
Esophagus Muscularis
SYPL2
0.32
0.23
lasso
10
0.37
6.8e-24
4.0
5.3
9.0e-08
-0.57
0.59
0.36
FALSE