1512 significantly associated models · 326 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 959842 | 2404256 | 2 | 1 | 4.0e-08 | 2.2e-07 | 1.4e-01 | 92 | NADK |
2 | 1 | 5611729 | 7016109 | 2 | 1 | 5.1e-08 | 1.3e-11 | 3.4e-07 | 43 | DNAJC11 |
3 | 1 | 15154630 | 16613660 | 1 | 1 | 1.8e-08 | 2.3e-06 | 9.2e-01 | 100 | DNAJC16 |
4 | 1 | 28823671 | 30246262 | 1 | 1 | 1.7e-07 | 3.1e-06 | 1.8e-01 | 92 | MECR |
5 | 1 | 53996718 | 55567410 | 1 | 1 | 1.2e-07 | 1.9e-09 | 1.9e-03 | 73 | SSBP3 |
6 | 1 | 61448835 | 63322743 | 2 | 2 | 2.9e-08 | 1.4e-10 | 7.8e-01 | 100 | INADL TM2D1 |
7 | 1 | 65189751 | 66803080 | 2 | 1 | 5.3e-13 | 1.4e-12 | 7.0e-04 | 77 | LEPR |
8 | 1 | 71163715 | 73435171 | 1 | 1 | 9.6e-27 | 8.9e-29 | 7.4e-06 | 84 | NEGR1 |
9 | 1 | 73974388 | 75922251 | 2 | 2 | 5.7e-12 | 7.9e-61 | 6.1e-44 | 29 | FPGT TYW3 |
10 | 1 | 109316076 | 110733794 | 3 | 2 | 3.5e-10 | 1.4e-08 | 4.7e-01 | 98 | AMIGO1 ATXN7L2 |
11 | 1 | 112312154 | 113857970 | 2 | 1 | 1.2e-07 | 1.3e-06 | 6.7e-02 | 86 | ST7L |
12 | 1 | 155172725 | 156572984 | 1 | 1 | 1.1e-07 | 2.1e-07 | 3.4e-01 | 97 | RIT1 |
13 | 1 | 177195050 | 178753162 | 5 | 2 | 2.5e-27 | 3.7e-116 | 1.2e-70 | 40 | RASAL2-AS1 RP11-568K15.1 |
14 | 1 | 204982713 | 206329620 | 5 | 1 | 4.2e-10 | 2.1e-09 | 1.0e+00 | 100 | PM20D1 |
15 | 2 | 15703 | 1384725 | 4 | 8 | 8.9e-16 | 5.0e-83 | NaN | NaN | AC092159.2 SH3YL1 TMEM18 |
16 | 2 | 23604114 | 26088769 | 11 | 8 | 1.4e-114 | 2.1e-100 | NaN | NaN | ADCY3 EFR3B FAM228B NCOA1 POMC |
17 | 2 | 61059010 | 61613261 | 1 | 1 | 1.3e-07 | 6.8e-08 | 4.4e-02 | 86 | KIAA1841 |
18 | 2 | 66927859 | 68326904 | 1 | 1 | 2.9e-08 | 3.5e-09 | 3.0e-03 | 75 | ETAA1 |
19 | 2 | 96669134 | 97176634 | 1 | 1 | 5.0e-08 | 2.0e-07 | 5.1e-01 | 98 | TMEM127 |
20 | 2 | 160095086 | 161610478 | 1 | 1 | 1.9e-08 | 8.8e-07 | 6.0e-03 | 69 | PLA2R1 |
21 | 2 | 187360440 | 189113345 | 2 | 1 | 6.8e-08 | 3.4e-08 | 1.0e+00 | 100 | CALCRL |
22 | 2 | 206159496 | 207637397 | 2 | 1 | 7.6e-10 | 9.6e-13 | 2.4e-07 | 48 | GPR1 |
23 | 2 | 207696167 | 209165083 | 1 | 1 | 1.4e-07 | 7.1e-07 | 7.2e-03 | 71 | CREB1 |
24 | 2 | 241477073 | 242953866 | 1 | 1 | 1.2e-07 | 5.5e-06 | 5.7e-01 | 98 | HDLBP |
25 | 3 | 10617048 | 12457119 | 2 | 1 | 1.2e-14 | 2.6e-14 | 8.2e-04 | 81 | ATG7 |
26 | 3 | 46919379 | 49035885 | 4 | 1 | 1.9e-09 | 4.2e-09 | 1.4e-01 | 94 | CSPG5 |
27 | 3 | 49615624 | 51320800 | 10 | 1 | 1.8e-11 | 4.0e-08 | 1.6e-03 | 67 | RASSF1 |
28 | 3 | 84317575 | 86808226 | 1 | 1 | 3.7e-16 | 5.3e-18 | 2.2e-06 | 70 | CADM2 |
29 | 3 | 87495550 | 88911119 | 2 | 1 | 3.5e-09 | 7.2e-09 | 1.0e+00 | 100 | C3orf38 |
30 | 3 | 137733141 | 138296968 | 1 | 1 | 4.4e-08 | 5.0e-10 | 2.5e-03 | 76 | TXNDC6 |
31 | 3 | 140514022 | 142017527 | 1 | 1 | 2.0e-09 | 5.4e-11 | 7.2e-04 | 73 | RASA2 |
32 | 4 | 55598706 | 57110821 | 1 | 1 | 1.2e-07 | 6.7e-06 | 1.6e-01 | 90 | CLOCK |
33 | 5 | 63328721 | 64762465 | 1 | 2 | 1.5e-08 | 6.0e-14 | 1.1e-05 | 66 | SREK1IP1 |
34 | 5 | 74115338 | 75704085 | 2 | 1 | 2.3e-08 | 1.0e-08 | 2.3e-03 | 72 | POLK |
35 | 5 | 175819032 | 177138298 | 1 | 1 | 6.9e-08 | 9.9e-07 | 3.4e-01 | 96 | FGFR4 |
36 | 6 | 34065982 | 36158878 | 2 | 2 | 1.3e-08 | 7.3e-08 | 1.6e-02 | 80 | TEAD3 UHRF1BP1 |
37 | 6 | 41042590 | 42443108 | 2 | 1 | 2.3e-10 | 1.5e-11 | 1.0e+00 | 100 | FRS3 |
38 | 6 | 42496457 | 43892938 | 2 | 2 | 3.5e-08 | 8.4e-07 | 2.2e-01 | 94 | CRIP3 DNPH1 |
39 | 6 | 52815766 | 54379332 | 2 | 2 | 1.5e-07 | 9.0e-12 | 5.7e-05 | 65 | C6orf142 KLHL31 |
40 | 6 | 104706579 | 106230491 | 1 | 1 | 2.9e-09 | 1.1e-08 | 5.2e-02 | 88 | LIN28B |
41 | 7 | 32470370 | 34339347 | 1 | 1 | 1.6e-10 | 3.2e-07 | 3.2e-01 | 96 | BBS9 |
42 | 7 | 75913086 | 77370662 | 1 | 1 | 2.5e-08 | 8.3e-08 | 1.7e-01 | 94 | DTX2P1-UPK3BP1-PMS2P11 |
43 | 7 | 92169872 | 93683737 | 1 | 1 | 4.4e-09 | 2.7e-16 | 4.9e-10 | 42 | CCDC132 |
44 | 7 | 101412077 | 102807435 | 1 | 1 | 3.3e-08 | 1.3e-06 | 1.2e-01 | 89 | LRWD1 |
45 | 7 | 138121329 | 139565916 | 1 | 1 | 3.1e-08 | 8.4e-09 | 1.0e+00 | 100 | TTC26 |
46 | 8 | 8092025 | 12973575 | 32 | 12 | 5.6e-14 | 1.9e-13 | NaN | NaN | AC087269.1 AF131215.2 AF131215.9 AMAC1L2 FAM86B3P FLJ10661 MFHAS1 MSRA PINX1 SGK223 TDH |
47 | 8 | 38025175 | 38574366 | 1 | 1 | 1.1e-07 | 2.9e-09 | 6.9e-03 | 79 | FGFR1 |
48 | 8 | 40875503 | 41413018 | 1 | 1 | 2.5e-07 | 2.8e-08 | 1.5e-02 | 81 | SFRP1 |
49 | 9 | 95502571 | 96913764 | 3 | 3 | 2.8e-13 | 3.2e-17 | 1.4e-02 | 92 | FAM120AOS PHF2 RP11-165J3.6 |
50 | 9 | 97828471 | 99324377 | 3 | 1 | 5.6e-09 | 5.0e-12 | 1.2e-04 | 69 | C9orf130 |
51 | 10 | 70696908 | 71213650 | 1 | 1 | 3.0e-08 | 2.2e-08 | 8.8e-03 | 78 | SUPV3L1 |
52 | 10 | 120954350 | 122399277 | 1 | 1 | 1.4e-07 | 1.3e-07 | 5.6e-02 | 87 | SEC23IP |
53 | 11 | 26818083 | 29054545 | 2 | 2 | 2.4e-12 | 2.7e-17 | 2.7e-04 | 82 | LIN7C METTL15 |
54 | 11 | 46543524 | 48783497 | 17 | 7 | 8.1e-24 | 3.0e-18 | NaN | NaN | ACP2 C1QTNF4 FNBP4 MADD PTPMT1 |
55 | 11 | 64669105 | 66456387 | 9 | 1 | 1.6e-11 | 5.4e-11 | 3.0e-03 | 80 | MAP3K11 |
56 | 11 | 67339278 | 68738157 | 2 | 1 | 3.1e-08 | 4.5e-13 | 1.7e-06 | 56 | C11orf24 |
57 | 11 | 68781070 | 70179848 | 2 | 1 | 2.7e-10 | 7.6e-11 | 1.0e+00 | 100 | ORAOV1 |
58 | 12 | 48605088 | 51365312 | 20 | 18 | 9.5e-58 | 4.1e-82 | NaN | NaN | CCDC65 CERS5 FAIM2 LIMA1 LMBR1L RP11-386G11.10 SMARCD1 TUBA1C |
59 | 13 | 27300215 | 29410882 | 5 | 5 | 2.4e-12 | 7.2e-17 | 1.8e-01 | 98 | AL137059.1 FLT3 GTF3A PAN3-AS1 |
60 | 15 | 23641196 | 24625502 | 1 | 1 | 1.3e-09 | 7.1e-09 | 5.7e-02 | 89 | NDN |
61 | 15 | 66998610 | 68825675 | 5 | 10 | 1.5e-22 | 6.1e-29 | NaN | NaN | IQCH IQCH-AS1 LBXCOR1 MAP2K5 |
62 | 16 | 3301360 | 4855279 | 4 | 3 | 4.0e-15 | 1.2e-24 | 2.1e-13 | 49 | ADCY9 BTBD12 RP11-462G12.1 |
63 | 16 | 19016966 | 21147999 | 8 | 2 | 1.7e-37 | 2.1e-37 | 1.0e+00 | 100 | ACSM5 GPRC5B |
64 | 16 | 27655848 | 31833122 | 54 | 2 | 4.6e-18 | 8.9e-17 | 1.0e+00 | 100 | RP11-347C12.2 SH2B1 |
65 | 16 | 52828325 | 54846383 | 2 | 3 | 2.9e-41 | 8.5e-183 | 1.1e-106 | 42 | AKTIP FTO |
66 | 16 | 66542957 | 68674788 | 7 | 1 | 7.6e-13 | 8.5e-13 | 1.0e+00 | 100 | ATP6V0D1 |
67 | 16 | 80779331 | 82439714 | 1 | 1 | 2.6e-08 | 5.5e-11 | 1.7e-04 | 67 | CMIP |
68 | 17 | 1263564 | 2953418 | 5 | 1 | 5.1e-14 | 1.5e-13 | 1.0e+00 | 100 | SRR |
69 | 17 | 34157655 | 35675511 | 6 | 1 | 2.4e-11 | 1.9e-10 | 1.0e+00 | 100 | DHRS11 |
70 | 17 | 43871147 | 43913030 | 1 | 1 | 6.7e-09 | 6.4e-03 | 8.0e-02 | 59 | KANSL1 |
71 | 18 | 20393480 | 21863589 | 2 | 1 | 1.8e-08 | 2.7e-07 | 7.8e-01 | 100 | C18orf8 |
72 | 18 | 38837001 | 40365619 | 1 | 1 | 1.5e-07 | 3.0e-07 | 3.6e-02 | 83 | PIK3C3 |
73 | 18 | 57349900 | 58729694 | 1 | 1 | 4.9e-18 | 2.1e-69 | 5.1e-54 | 23 | MC4R |
74 | 18 | 76456503 | 77984604 | 1 | 1 | 1.4e-07 | 3.6e-08 | 1.0e-02 | 78 | NFATC1 |
75 | 19 | 1473344 | 2923263 | 1 | 1 | 1.3e-07 | 7.9e-07 | 9.5e-02 | 89 | DOT1L |
76 | 19 | 18451661 | 20313262 | 8 | 2 | 1.7e-10 | 7.7e-10 | 3.2e-09 | 7 | HAPLN4 MEF2B |
77 | 19 | 37464375 | 38861362 | 1 | 1 | 2.7e-07 | 1.7e-05 | 8.7e-01 | 100 | ZNF781 |
78 | 19 | 47308666 | 47796800 | 1 | 1 | 7.5e-09 | 5.0e-17 | 1.2e-10 | 41 | TMEM160 |
79 | 19 | 48918157 | 49452462 | 2 | 1 | 1.2e-07 | 2.1e-07 | 2.8e-01 | 96 | NTN5 |
80 | 22 | 21798199 | 23002699 | 3 | 1 | 1.5e-09 | 2.7e-09 | 3.2e-01 | 97 | PPM1F |
81 | 22 | 40061683 | 42784201 | 6 | 4 | 2.5e-13 | 4.4e-13 | 1.0e+00 | 100 | ADSL EP300 NHP2L1 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Ovary | 14 | 1.54 | 3.4 |
GTEx | Whole Blood | 20 | 1.00 | 3.4 |
GTEx | Cells EBV-transformed lymphocytes | 13 | 0.91 | 3.3 |
GTEx | Brain Cortex | 15 | 1.45 | 3.2 |
GTEx | Heart Left Ventricle | 22 | 1.44 | 3.2 |
GTEx | Prostate | 12 | 1.44 | 3.2 |
GTEx | Small Intestine Terminal Ileum | 7 | 1.52 | 3.2 |
GTEx | Uterus | 7 | 1.23 | 3.2 |
GTEx | Vagina | 11 | 1.73 | 3.2 |
GTEx | Brain Frontal Cortex BA9 | 12 | 1.30 | 3.1 |
GTEx | Spleen | 14 | 0.99 | 3.1 |
GTEx | Adipose Subcutaneous | 46 | 1.32 | 3.0 |
GTEx | Artery Tibial | 46 | 1.22 | 3.0 |
GTEx | Brain Caudate basal ganglia | 8 | 0.87 | 3.0 |
GTEx | Liver | 6 | 0.84 | 3.0 |
GTEx | Lung | 40 | 1.39 | 3.0 |
GTEx | Nerve Tibial | 44 | 1.02 | 3.0 |
GTEx | Pituitary | 13 | 1.17 | 3.0 |
ROSMAP | Brain Pre-frontal Cortex | 57 | 1.30 | 3.0 |
GTEx | Adipose Visceral Omentum | 22 | 1.08 | 2.9 |
GTEx | Adrenal Gland | 14 | 0.96 | 2.9 |
GTEx | Artery Aorta | 41 | 1.38 | 2.9 |
GTEx | Brain Hippocampus | 5 | 0.95 | 2.9 |
GTEx | Brain Hypothalamus | 5 | 0.85 | 2.9 |
GTEx | Breast Mammary Tissue | 24 | 1.22 | 2.9 |
GTEx | Colon Transverse | 23 | 1.11 | 2.9 |
GTEx | Esophagus Gastroesophageal Junction | 17 | 1.18 | 2.9 |
GTEx | Esophagus Muscularis | 41 | 1.27 | 2.9 |
GTEx | Heart Atrial Appendage | 21 | 1.33 | 2.9 |
GTEx | Stomach | 16 | 1.10 | 2.9 |
GTEx | Testis | 32 | 1.01 | 2.9 |
GTEx | Artery Coronary | 11 | 0.93 | 2.8 |
GTEx | Brain Cerebellar Hemisphere | 14 | 0.94 | 2.8 |
GTEx | Brain Cerebellum | 20 | 1.01 | 2.8 |
GTEx | Brain Nucleus accumbens basal ganglia | 10 | 1.16 | 2.8 |
GTEx | Brain Putamen basal ganglia | 6 | 0.96 | 2.8 |
GTEx | Breast Mammary Tissue (Male) | 12 | 1.01 | 2.8 |
GTEx | Breast Mammary Tissue (Female) | 15 | 0.91 | 2.8 |
GTEx | Cells Transformed fibroblasts | 37 | 0.88 | 2.8 |
GTEx | Esophagus Mucosa | 32 | 0.96 | 2.8 |
GTEx | Muscle Skeletal | 35 | 1.21 | 2.8 |
GTEx | Pancreas | 17 | 1.04 | 2.8 |
GTEx | Skin Not Sun Exposed Suprapubic | 30 | 1.22 | 2.8 |
GTEx | Skin Sun Exposed Lower leg | 42 | 1.15 | 2.8 |
CommonMind | Brain Pre-frontal Cortex | 49 | 0.91 | 2.8 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 13 | 0.79 | 2.8 |
GTEx | Colon Sigmoid | 10 | 0.68 | 2.7 |
GTEx | Thyroid | 38 | 0.95 | 2.7 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 19 | 0.92 | 2.7 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 9 | 0.88 | 2.7 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 8 | 0.60 | 2.7 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 2 | 0.39 | 2.7 |
NTR | Blood | 19 | 0.79 | 2.6 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 34 | 0.77 | 2.6 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 11 | 1.00 | 2.6 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 22 | 0.81 | 2.6 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 30 | 0.73 | 2.6 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 27 | 0.63 | 2.6 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 9 | 0.81 | 2.6 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 23 | 0.78 | 2.6 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 15 | 0.94 | 2.6 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 14 | 0.84 | 2.6 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 13 | 1.22 | 2.6 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 11 | 0.65 | 2.6 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 13 | 1.02 | 2.6 |
METSIM | Adipose | 30 | 0.65 | 2.5 |
YFS | Blood | 30 | 0.65 | 2.5 |
The Cancer Genome Atlas | Esophageal Carcinoma | 6 | 0.88 | 2.5 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 14 | 0.68 | 2.5 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 19 | 0.76 | 2.5 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 28 | 0.61 | 2.5 |
The Cancer Genome Atlas | Thyroid Carcinoma | 40 | 0.78 | 2.5 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 4 | 0.58 | 2.4 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 3 | 0.56 | 2.4 |