Best TWAS P=8.14e-19 · Best GWAS P=4.96e-14 conditioned to 0.024
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | DCBLD2 | 0.16 | 0.13 | lasso | 3 | 0.14 | 2.4e-11 | -6.267 | 5.9 | 3.6e-09 | 0.64 | 0.92 | 0.08 | FALSE |
2 | GTEx | Artery Tibial | ST3GAL6 | 0.14 | 0.09 | enet | 21 | 0.16 | 3.4e-12 | 6.558 | -6.0 | 2.5e-09 | -0.70 | 0.53 | 0.47 | FALSE |
3 | GTEx | Brain Cerebellar Hemisphere | DCBLD2 | 0.26 | 0.20 | lasso | 3 | 0.14 | 1.9e-04 | -4.695 | 5.7 | 1.5e-08 | 0.59 | 0.27 | 0.42 | FALSE |
4 | GTEx | Brain Frontal Cortex BA9 | DCBLD2 | 0.32 | 0.22 | lasso | 7 | 0.22 | 1.6e-06 | -4.695 | 5.4 | 5.6e-08 | 0.59 | 0.60 | 0.25 | FALSE |
5 | GTEx | Brain Frontal Cortex BA9 | ST3GAL6-AS1 | 0.52 | 0.32 | enet | 29 | 0.26 | 1.2e-07 | -3.770 | 5.2 | 2.2e-07 | 0.31 | 0.48 | 0.36 | FALSE |
6 | GTEx | Esophagus Gastroesophageal Junction | DCBLD2 | 0.24 | 0.21 | lasso | 4 | 0.19 | 1.4e-07 | -6.089 | 6.1 | 9.2e-10 | 0.69 | 0.25 | 0.74 | FALSE |
7 | GTEx | Esophagus Mucosa | DCBLD2 | 0.11 | 0.12 | lasso | 4 | 0.11 | 1.5e-07 | 6.525 | 6.7 | 1.8e-11 | 0.85 | 0.62 | 0.38 | FALSE |
8 | GTEx | Esophagus Mucosa | ST3GAL6 | 0.21 | 0.14 | enet | 9 | 0.09 | 2.5e-06 | -3.770 | 5.6 | 2.2e-08 | 0.45 | 0.97 | 0.03 | FALSE |
9 | GTEx | Esophagus Muscularis | DCBLD2 | 0.21 | 0.19 | lasso | 6 | 0.17 | 1.6e-10 | -4.684 | 5.4 | 6.7e-08 | 0.71 | 0.79 | 0.21 | FALSE |
10 | GTEx | Nerve Tibial | DCBLD2 | 0.14 | 0.05 | lasso | 5 | 0.03 | 1.7e-03 | 6.186 | 7.4 | 1.4e-13 | 0.33 | 0.25 | 0.13 | FALSE |
11 | GTEx | Skin Not Sun Exposed Suprapubic | DCBLD2 | 0.25 | 0.25 | lasso | 5 | 0.24 | 1.4e-13 | 6.508 | 6.6 | 3.1e-11 | 0.85 | 0.57 | 0.43 | FALSE |
12 | GTEx | Skin Not Sun Exposed Suprapubic | ST3GAL6 | 0.15 | 0.18 | lasso | 5 | 0.18 | 5.1e-10 | 6.427 | 6.5 | 1.1e-10 | 0.84 | 0.59 | 0.41 | FALSE |
13 | GTEx | Skin Sun Exposed Lower leg | DCBLD2 | 0.17 | 0.12 | lasso | 7 | 0.15 | 9.2e-13 | 6.427 | 6.0 | 2.0e-09 | 0.88 | 0.01 | 0.99 | FALSE |
14 | GTEx | Skin Sun Exposed Lower leg | ST3GAL6 | 0.07 | 0.04 | enet | 16 | 0.04 | 2.0e-04 | 6.484 | 7.5 | 4.2e-14 | 0.83 | 0.02 | 0.97 | FALSE |
15 | GTEx | Thyroid | DCBLD2 | 0.14 | 0.12 | lasso | 5 | 0.15 | 1.5e-11 | -6.267 | 7.2 | 8.5e-13 | 0.74 | 0.89 | 0.11 | FALSE |
16 | GTEx | Thyroid | ST3GAL6 | 0.07 | 0.02 | enet | 12 | 0.05 | 6.4e-05 | 5.222 | 6.5 | 8.4e-11 | 0.58 | 0.03 | 0.84 | FALSE |
17 | METSIM | Adipose | CPOX | 0.09 | 0.02 | blup | 456 | 0.05 | 6.4e-08 | -0.058 | -5.5 | 4.5e-08 | -0.16 | 0.92 | 0.06 | FALSE |
18 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | DCBLD2 | 0.07 | 0.06 | enet | 3 | 0.07 | 7.6e-04 | -5.285 | 5.4 | 8.2e-08 | 0.60 | 0.12 | 0.13 | FALSE |
19 | The Cancer Genome Atlas | Prostate Adenocarcinoma | DCBLD2 | 0.09 | 0.01 | enet | 16 | 0.04 | 9.6e-05 | 6.567 | 8.9 | 8.1e-19 | 0.66 | 0.05 | 0.77 | TRUE |