Best TWAS P=5.83e-11 · Best GWAS P=2.43e-09 conditioned to 0.502
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DLST | 0.09 | 0.11 | lasso | 2 | 0.11 | 4.0e-13 | -5.8 | 6.0 | 2.0e-09 | -0.95 | 0.02 | 0.98 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | RPS6KL1 | 0.04 | 0.02 | lasso | 5 | 0.02 | 4.8e-04 | 5.0 | -5.2 | 2.3e-07 | 0.68 | 0.13 | 0.65 | FALSE |
3 | GTEx | Artery Tibial | RPS6KL1 | 0.16 | 0.11 | lasso | 7 | 0.13 | 1.1e-10 | 5.4 | 5.4 | 7.3e-08 | -0.71 | 0.19 | 0.81 | FALSE |
4 | GTEx | Esophagus Muscularis | RPS6KL1 | 0.10 | 0.11 | lasso | 2 | 0.09 | 3.1e-06 | 5.4 | 5.2 | 1.6e-07 | -0.72 | 0.28 | 0.71 | FALSE |
5 | GTEx | Nerve Tibial | YLPM1 | 0.08 | 0.06 | lasso | 1 | 0.04 | 5.1e-04 | 5.4 | 5.4 | 7.2e-08 | -0.76 | 0.06 | 0.80 | FALSE |
6 | GTEx | Nerve Tibial | RPS6KL1 | 0.17 | 0.24 | lasso | 6 | 0.19 | 2.3e-13 | 5.0 | 5.2 | 1.7e-07 | -0.76 | 0.58 | 0.42 | FALSE |
7 | GTEx | Skin Not Sun Exposed Suprapubic | RPS6KL1 | 0.08 | 0.08 | enet | 11 | 0.07 | 1.5e-04 | 5.8 | 6.1 | 1.1e-09 | -0.94 | 0.03 | 0.97 | FALSE |
8 | GTEx | Testis | AREL1 | 0.20 | 0.14 | enet | 34 | 0.13 | 2.1e-06 | 5.8 | 6.5 | 5.8e-11 | -0.86 | 0.02 | 0.98 | TRUE |
9 | GTEx | Thyroid | RPS6KL1 | 0.23 | 0.14 | enet | 14 | 0.14 | 1.3e-10 | 5.4 | 5.2 | 2.4e-07 | -0.71 | 0.32 | 0.68 | FALSE |
10 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RPS6KL1 | 0.03 | 0.02 | lasso | 3 | 0.02 | 8.5e-06 | 5.9 | 6.0 | 2.5e-09 | -0.86 | 0.01 | 0.99 | FALSE |
11 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | RPS6KL1 | 0.04 | 0.04 | lasso | 3 | 0.03 | 1.8e-04 | 5.8 | 5.8 | 7.5e-09 | -0.88 | 0.01 | 0.98 | FALSE |
12 | The Cancer Genome Atlas | Lung Adenocarcinoma | RPS6KL1 | 0.03 | 0.01 | blup | 49 | 0.02 | 2.3e-03 | 5.4 | 5.3 | 1.3e-07 | -0.67 | 0.03 | 0.48 | FALSE |
13 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | RPS6KL1 | 0.02 | 0.02 | lasso | 2 | 0.02 | 5.6e-03 | 5.4 | 5.3 | 9.6e-08 | -0.73 | 0.04 | 0.29 | FALSE |