738 significantly associated models · 121 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 148450412 | 149022674 | 1 | 1 | 2.6e-08 | 5.5e-07 | 0.5440 | 98 | ORC4L |
2 | 3 | 49598064 | 51234774 | 6 | 1 | 9.6e-08 | 7.8e-08 | 1.0000 | 100 | U73166.2 |
3 | 3 | 51616334 | 53778875 | 11 | 1 | 1.2e-08 | 8.9e-08 | 0.5710 | 99 | ITIH4 |
4 | 3 | 84317575 | 86808226 | 1 | 1 | 6.4e-17 | 3.1e-17 | 0.1000 | 96 | CADM2 |
5 | 3 | 135273949 | 137261517 | 5 | 1 | 1.0e-10 | 5.1e-10 | 0.5410 | 99 | RP11-85F14.5 |
6 | 5 | 92808753 | 94615316 | 1 | 1 | 2.4e-09 | 2.4e-08 | 1.0000 | 100 | KIAA0825 |
7 | 6 | 25296606 | 26689223 | 1 | 1 | 9.8e-08 | 1.1e-06 | 0.0061 | 68 | U91328.19 |
8 | 6 | 89108830 | 90520848 | 1 | 1 | 2.1e-07 | 1.6e-05 | 0.2340 | 92 | SRSF12 |
9 | 7 | 6502367 | 7988091 | 1 | 1 | 7.0e-08 | 1.8e-08 | 0.0542 | 88 | C1GALT1 |
10 | 8 | 8092025 | 13120332 | 34 | 1 | 7.6e-20 | 1.7e-16 | 0.0251 | 93 | AF131215.2 |
11 | 10 | 103550604 | 105647095 | 7 | 1 | 5.4e-10 | 1.9e-10 | 0.0104 | 84 | AS3MT |
12 | 11 | 46499874 | 48028343 | 2 | 2 | 6.7e-09 | 2.0e-07 | 0.6930 | 99 | MADD PACSIN3 |
13 | 14 | 74424938 | 76089054 | 4 | 1 | 5.8e-11 | 2.4e-09 | 0.5020 | 99 | AREL1 |
14 | 16 | 28825605 | 31860399 | 17 | 2 | 4.5e-11 | 5.5e-10 | 0.4220 | 98 | INO80E KAT8 |
15 | 17 | 1517914 | 2939981 | 3 | 1 | 5.0e-10 | 5.5e-07 | 0.0055 | 69 | SRR |
16 | 17 | 4488884 | 6031861 | 2 | 1 | 4.2e-08 | 4.4e-08 | 1.0000 | 100 | RPAIN |
17 | 17 | 42607368 | 45796313 | 20 | 1 | 2.3e-11 | 1.3e-10 | 1.0000 | 100 | LRRC37A4P |
18 | 20 | 32594714 | 34225302 | 3 | 2 | 6.5e-08 | 1.5e-08 | 0.1320 | 93 | GSS TP53INP2 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Small Intestine Terminal Ileum | 9 | 1.95 | 2.4 |
GTEx | Brain Frontal Cortex BA9 | 6 | 0.65 | 2.2 |
GTEx | Brain Hippocampus | 5 | 0.95 | 2.2 |
GTEx | Ovary | 11 | 1.21 | 2.2 |
GTEx | Uterus | 8 | 1.41 | 2.2 |
GTEx | Vagina | 10 | 1.57 | 2.2 |
GTEx | Artery Coronary | 12 | 1.01 | 2.1 |
GTEx | Brain Cortex | 7 | 0.68 | 2.1 |
GTEx | Cells EBV-transformed lymphocytes | 13 | 0.91 | 2.1 |
GTEx | Colon Transverse | 15 | 0.73 | 2.1 |
GTEx | Heart Left Ventricle | 12 | 0.78 | 2.1 |
GTEx | Liver | 4 | 0.56 | 2.1 |
GTEx | Pituitary | 10 | 0.90 | 2.1 |
GTEx | Prostate | 7 | 0.84 | 2.1 |
GTEx | Spleen | 9 | 0.64 | 2.1 |
GTEx | Adipose Visceral Omentum | 12 | 0.59 | 2.0 |
GTEx | Artery Aorta | 19 | 0.64 | 2.0 |
GTEx | Brain Caudate basal ganglia | 6 | 0.65 | 2.0 |
GTEx | Brain Cerebellar Hemisphere | 9 | 0.60 | 2.0 |
GTEx | Brain Cerebellum | 8 | 0.40 | 2.0 |
GTEx | Brain Putamen basal ganglia | 4 | 0.64 | 2.0 |
GTEx | Breast Mammary Tissue | 13 | 0.66 | 2.0 |
GTEx | Breast Mammary Tissue (Male) | 11 | 0.92 | 2.0 |
GTEx | Breast Mammary Tissue (Female) | 14 | 0.85 | 2.0 |
GTEx | Colon Sigmoid | 11 | 0.75 | 2.0 |
GTEx | Esophagus Gastroesophageal Junction | 11 | 0.76 | 2.0 |
GTEx | Esophagus Muscularis | 20 | 0.62 | 2.0 |
GTEx | Heart Atrial Appendage | 11 | 0.70 | 2.0 |
GTEx | Lung | 17 | 0.59 | 2.0 |
GTEx | Pancreas | 9 | 0.55 | 2.0 |
GTEx | Skin Not Sun Exposed Suprapubic | 18 | 0.73 | 2.0 |
GTEx | Stomach | 11 | 0.76 | 2.0 |
ROSMAP | Brain Pre-frontal Cortex | 30 | 0.68 | 2.0 |
The Cancer Genome Atlas | Esophageal Carcinoma | 6 | 0.88 | 2.0 |
GTEx | Adrenal Gland | 9 | 0.62 | 1.9 |
GTEx | Artery Tibial | 17 | 0.45 | 1.9 |
GTEx | Brain Hypothalamus | 4 | 0.68 | 1.9 |
GTEx | Brain Nucleus accumbens basal ganglia | 8 | 0.92 | 1.9 |
GTEx | Cells Transformed fibroblasts | 16 | 0.38 | 1.9 |
GTEx | Esophagus Mucosa | 17 | 0.51 | 1.9 |
GTEx | Muscle Skeletal | 14 | 0.48 | 1.9 |
GTEx | Nerve Tibial | 17 | 0.39 | 1.9 |
GTEx | Skin Sun Exposed Lower leg | 16 | 0.44 | 1.9 |
GTEx | Testis | 18 | 0.57 | 1.9 |
GTEx | Thyroid | 20 | 0.50 | 1.9 |
GTEx | Whole Blood | 9 | 0.45 | 1.9 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 8 | 0.48 | 1.9 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 6 | 0.45 | 1.9 |
GTEx | Adipose Subcutaneous | 15 | 0.43 | 1.8 |
NTR | Blood | 7 | 0.29 | 1.8 |
CommonMind | Brain Pre-frontal Cortex | 10 | 0.19 | 1.8 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 12 | 0.27 | 1.8 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 3 | 0.15 | 1.8 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 3 | 0.29 | 1.8 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 12 | 0.29 | 1.8 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 6 | 0.29 | 1.8 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 2 | 0.18 | 1.8 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 11 | 0.37 | 1.8 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 12 | 0.48 | 1.8 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 8 | 0.50 | 1.8 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 5 | 0.30 | 1.8 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 4 | 0.58 | 1.8 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 4 | 0.37 | 1.8 |
METSIM | Adipose | 6 | 0.13 | 1.7 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 4 | 0.36 | 1.7 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 7 | 0.26 | 1.7 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 10 | 0.23 | 1.7 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 10 | 0.22 | 1.7 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.19 | 1.7 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 6 | 0.36 | 1.7 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 6 | 0.47 | 1.7 |
The Cancer Genome Atlas | Thyroid Carcinoma | 11 | 0.21 | 1.7 |
YFS | Blood | 5 | 0.11 | 1.6 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 1 | 0.20 | 1.6 |