Best TWAS P=2.75e-11 · Best GWAS P=2.96e-10 conditioned to 0.999
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DLST | 0.09 | 0.11 | lasso | 2 | 0.11 | 4.0e-13 | -5.8 | 6.2 | 7.3e-10 | 0.93 | 0.02 | 0.98 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | RPS6KL1 | 0.04 | 0.02 | lasso | 5 | 0.02 | 4.8e-04 | 5.1 | -6.0 | 1.8e-09 | -0.82 | 0.09 | 0.76 | FALSE |
3 | GTEx | Adipose Subcutaneous | YLPM1 | 0.10 | 0.03 | lasso | 6 | 0.02 | 7.9e-03 | -5.6 | 5.7 | 1.3e-08 | 0.77 | 0.06 | 0.63 | FALSE |
4 | GTEx | Adipose Subcutaneous | RPS6KL1 | 0.09 | 0.12 | lasso | 3 | 0.10 | 2.5e-08 | 5.2 | 5.3 | 1.2e-07 | 0.78 | 0.74 | 0.26 | FALSE |
5 | GTEx | Adrenal Gland | RPS6KL1 | 0.21 | 0.13 | enet | 25 | 0.15 | 4.4e-06 | 5.2 | 5.2 | 1.7e-07 | 0.73 | 0.19 | 0.76 | FALSE |
6 | GTEx | Colon Sigmoid | MLH3 | 0.17 | 0.02 | enet | 9 | 0.00 | 2.4e-01 | -2.2 | -5.5 | 3.6e-08 | -0.38 | 0.08 | 0.25 | TRUE |
7 | GTEx | Muscle Skeletal | DLST | 0.28 | 0.26 | enet | 23 | 0.26 | 2.1e-25 | -5.1 | -5.1 | 3.0e-07 | -0.59 | 0.86 | 0.14 | FALSE |
8 | GTEx | Nerve Tibial | YLPM1 | 0.08 | 0.06 | lasso | 1 | 0.04 | 5.1e-04 | 5.6 | 5.6 | 2.6e-08 | 0.86 | 0.05 | 0.84 | FALSE |
9 | GTEx | Nerve Tibial | RPS6KL1 | 0.17 | 0.24 | lasso | 6 | 0.19 | 2.3e-13 | 5.2 | 5.3 | 1.4e-07 | 0.78 | 0.80 | 0.20 | FALSE |
10 | GTEx | Skin Not Sun Exposed Suprapubic | RPS6KL1 | 0.08 | 0.08 | enet | 11 | 0.07 | 1.5e-04 | 6.0 | 6.4 | 1.7e-10 | 0.94 | 0.03 | 0.97 | FALSE |
11 | GTEx | Skin Sun Exposed Lower leg | RPS6KL1 | 0.15 | 0.13 | lasso | 4 | 0.12 | 1.8e-10 | 4.7 | 5.2 | 2.5e-07 | 0.83 | 0.56 | 0.44 | FALSE |
12 | GTEx | Testis | AREL1 | 0.20 | 0.14 | enet | 34 | 0.13 | 2.1e-06 | 6.2 | 6.7 | 2.7e-11 | 0.91 | 0.01 | 0.99 | TRUE |
13 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RPS6KL1 | 0.03 | 0.02 | lasso | 3 | 0.02 | 8.5e-06 | 6.2 | 6.2 | 4.8e-10 | 0.97 | 0.00 | 1.00 | FALSE |
14 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | RPS6KL1 | 0.04 | 0.04 | lasso | 3 | 0.03 | 1.8e-04 | 6.3 | 6.0 | 1.7e-09 | 0.96 | 0.00 | 0.99 | FALSE |
15 | The Cancer Genome Atlas | Lung Adenocarcinoma | RPS6KL1 | 0.03 | 0.01 | blup | 49 | 0.02 | 2.3e-03 | 5.6 | 5.4 | 5.7e-08 | 0.77 | 0.02 | 0.60 | FALSE |