Best TWAS P=3.89e-08 · Best GWAS P=4.21e-08 conditioned to 0.601
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | RP11-196G11.2 | 0.23 | 0.20 | lasso | 9 | 0.21 | 4.2e-17 | -5.2 | -5.2 | 1.8e-07 | 0.67 | 0.02 | 0.98 | FALSE |
2 | GTEx | Adipose Visceral Omentum | RP11-196G11.2 | 0.08 | 0.07 | enet | 16 | 0.08 | 8.4e-05 | -5.2 | -5.2 | 1.5e-07 | 0.82 | 0.05 | 0.94 | FALSE |
3 | GTEx | Artery Aorta | STX1B | 0.17 | 0.18 | lasso | 6 | 0.15 | 1.9e-08 | -5.2 | -5.2 | 1.6e-07 | 0.69 | 0.02 | 0.97 | FALSE |
4 | GTEx | Artery Tibial | RP11-196G11.2 | 0.08 | 0.04 | lasso | 4 | 0.03 | 3.8e-03 | -5.0 | -5.2 | 2.2e-07 | 0.67 | 0.03 | 0.95 | FALSE |
5 | GTEx | Brain Cerebellum | STX1B | 0.24 | 0.16 | lasso | 11 | 0.18 | 4.8e-06 | -4.9 | -5.1 | 2.9e-07 | 0.62 | 0.05 | 0.93 | FALSE |
6 | GTEx | Brain Cerebellum | STX4 | 0.14 | 0.25 | lasso | 1 | 0.24 | 8.3e-08 | -5.2 | -5.2 | 2.6e-07 | 0.66 | 0.04 | 0.95 | FALSE |
7 | GTEx | Brain Cerebellum | RP11-196G11.2 | 0.31 | 0.30 | lasso | 4 | 0.36 | 1.3e-11 | -5.2 | -5.2 | 1.9e-07 | 0.67 | 0.04 | 0.96 | FALSE |
8 | GTEx | Cells Transformed fibroblasts | RP11-196G11.2 | 0.14 | 0.14 | lasso | 6 | 0.13 | 2.9e-10 | -5.2 | -5.1 | 3.0e-07 | 0.69 | 0.03 | 0.97 | FALSE |
9 | GTEx | Colon Transverse | RP11-196G11.2 | 0.24 | 0.11 | lasso | 5 | 0.15 | 1.9e-07 | -5.0 | -5.1 | 3.1e-07 | 0.67 | 0.03 | 0.97 | FALSE |
10 | GTEx | Esophagus Muscularis | STX4 | 0.05 | 0.05 | lasso | 3 | 0.03 | 6.7e-03 | -5.0 | -5.2 | 2.4e-07 | 0.69 | 0.03 | 0.93 | FALSE |
11 | GTEx | Esophagus Muscularis | RP11-196G11.2 | 0.14 | 0.14 | lasso | 6 | 0.13 | 3.7e-08 | -5.2 | -5.3 | 1.1e-07 | 0.75 | 0.02 | 0.98 | FALSE |
12 | GTEx | Lung | RP11-196G11.2 | 0.21 | 0.12 | enet | 22 | 0.14 | 1.6e-10 | -5.1 | -5.4 | 8.1e-08 | 0.62 | 0.05 | 0.95 | FALSE |
13 | GTEx | Muscle Skeletal | STX4 | 0.04 | 0.04 | lasso | 3 | 0.03 | 2.9e-04 | -5.2 | -5.2 | 1.5e-07 | 0.70 | 0.02 | 0.97 | FALSE |
14 | GTEx | Nerve Tibial | HSD3B7 | 0.09 | 0.05 | lasso | 3 | 0.03 | 2.4e-03 | -5.1 | -5.1 | 2.6e-07 | 0.64 | 0.05 | 0.80 | FALSE |
15 | GTEx | Testis | STX1B | 0.26 | 0.23 | lasso | 5 | 0.25 | 1.2e-11 | -5.2 | -5.2 | 1.7e-07 | 0.64 | 0.03 | 0.97 | FALSE |
16 | GTEx | Testis | RP11-196G11.2 | 0.14 | 0.11 | lasso | 4 | 0.13 | 3.1e-06 | -5.0 | -5.1 | 2.7e-07 | 0.68 | 0.04 | 0.96 | FALSE |
17 | GTEx | Thyroid | RP11-196G11.2 | 0.11 | 0.14 | lasso | 2 | 0.14 | 3.5e-11 | -5.1 | -5.1 | 2.7e-07 | 0.67 | 0.04 | 0.96 | FALSE |
18 | METSIM | Adipose | RP11-196G11.2 | 0.13 | 0.17 | lasso | 9 | 0.16 | 2.2e-23 | -5.1 | -5.1 | 2.6e-07 | 0.68 | 0.03 | 0.97 | FALSE |
19 | ROSMAP | Brain Pre-frontal Cortex | YPEL3 | 0.06 | 0.03 | blup | 209 | 0.04 | 1.9e-05 | -4.1 | -5.2 | 2.0e-07 | 0.22 | 0.01 | 0.87 | TRUE |
20 | ROSMAP | Brain Pre-frontal Cortex | HSD3B7 | 0.03 | 0.05 | lasso | 6 | 0.02 | 3.0e-04 | -5.2 | -5.4 | 6.9e-08 | 0.68 | 0.03 | 0.96 | FALSE |
21 | ROSMAP | Brain Pre-frontal Cortex | RP11-196G11.2 | 0.12 | 0.12 | lasso | 4 | 0.12 | 1.1e-14 | -5.1 | -5.1 | 2.8e-07 | 0.68 | 0.03 | 0.96 | FALSE |
22 | YFS | Blood | STX4 | 0.03 | 0.06 | lasso | 2 | 0.05 | 4.3e-17 | -5.2 | -5.1 | 2.7e-07 | 0.70 | 0.03 | 0.97 | FALSE |
23 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MYST1 | 0.05 | 0.04 | blup | 34 | 0.08 | 2.1e-15 | -4.9 | -5.2 | 2.5e-07 | 0.78 | 0.04 | 0.96 | FALSE |
24 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PRSS53 | 0.03 | 0.03 | blup | 38 | 0.02 | 6.8e-06 | -5.0 | 5.3 | 1.2e-07 | -0.69 | 0.01 | 0.98 | FALSE |
25 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | MYST1 | 0.08 | 0.04 | blup | 34 | 0.07 | 7.2e-08 | 3.2 | -5.5 | 3.9e-08 | 0.73 | 0.04 | 0.95 | TRUE |