744 significantly associated models · 126 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 3 | 49598064 | 51234774 | 7 | 2 | 1.8e-10 | 5.2e-08 | 0.582 | 99 | CYB561D2 SEMA3B-AS1 |
2 | 3 | 51616334 | 54077726 | 13 | 1 | 1.2e-13 | 1.3e-11 | 0.115 | 95 | ITIH4-AS1 |
3 | 3 | 84317575 | 86808226 | 1 | 1 | 2.4e-16 | 3.6e-16 | 1.000 | 100 | CADM2 |
4 | 3 | 135173458 | 137261517 | 5 | 1 | 2.0e-11 | 1.6e-10 | 1.000 | 100 | STAG1 |
5 | 4 | 118707160 | 119423789 | 1 | 1 | 2.1e-07 | 6.9e-07 | 0.030 | 81 | NDST3 |
6 | 5 | 101762909 | 103244640 | 1 | 1 | 1.5e-07 | 2.1e-08 | 0.050 | 88 | PPIP5K2 |
7 | 7 | 126529931 | 128425768 | 3 | 2 | 4.8e-09 | 2.3e-10 | 0.011 | 84 | LRRC4 SND1 |
8 | 8 | 8092025 | 13120332 | 40 | 1 | 5.9e-28 | 4.2e-24 | 0.323 | 99 | AF131215.2 |
9 | 10 | 103527782 | 105647095 | 12 | 1 | 2.5e-13 | 1.1e-11 | 0.806 | 100 | AS3MT |
10 | 11 | 56666189 | 58178587 | 4 | 1 | 7.7e-09 | 5.8e-08 | 0.891 | 100 | ZDHHC5 |
11 | 11 | 94825532 | 96261289 | 2 | 1 | 1.6e-08 | 6.3e-08 | 0.217 | 95 | AP001877.1 |
12 | 11 | 130498156 | 131034037 | 1 | 1 | 1.5e-07 | 3.7e-06 | 0.736 | 100 | SNX19 |
13 | 11 | 133079948 | 134525648 | 1 | 1 | 9.2e-09 | 3.0e-08 | 0.079 | 90 | IGSF9B |
14 | 12 | 109231851 | 110605559 | 1 | 1 | 8.1e-08 | 1.7e-07 | 0.205 | 94 | KCTD10 |
15 | 14 | 74424938 | 76210831 | 5 | 2 | 2.7e-11 | 3.0e-10 | 0.999 | 100 | AREL1 MLH3 |
16 | 16 | 29580611 | 31758245 | 7 | 2 | 3.9e-08 | 4.2e-08 | 0.601 | 99 | MYST1 YPEL3 |
17 | 17 | 42607368 | 45796313 | 18 | 1 | 5.4e-09 | 3.1e-08 | 0.863 | 100 | MAPT |
18 | 18 | 52209411 | 54028036 | 1 | 1 | 1.5e-09 | 2.3e-10 | 0.017 | 86 | TCF4 |
19 | 22 | 40472399 | 41895409 | 1 | 1 | 1.1e-07 | 8.1e-08 | 0.199 | 94 | SLC25A17 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Small Intestine Terminal Ileum | 7 | 1.52 | 2.3 |
GTEx | Brain Cortex | 8 | 0.77 | 2.2 |
GTEx | Brain Frontal Cortex BA9 | 7 | 0.76 | 2.2 |
GTEx | Uterus | 8 | 1.41 | 2.2 |
GTEx | Adrenal Gland | 10 | 0.69 | 2.1 |
GTEx | Artery Coronary | 10 | 0.85 | 2.1 |
GTEx | Brain Hippocampus | 5 | 0.95 | 2.1 |
GTEx | Brain Hypothalamus | 5 | 0.85 | 2.1 |
GTEx | Brain Putamen basal ganglia | 6 | 0.96 | 2.1 |
GTEx | Cells EBV-transformed lymphocytes | 15 | 1.05 | 2.1 |
GTEx | Colon Sigmoid | 13 | 0.89 | 2.1 |
GTEx | Colon Transverse | 15 | 0.73 | 2.1 |
GTEx | Esophagus Gastroesophageal Junction | 10 | 0.69 | 2.1 |
GTEx | Heart Left Ventricle | 11 | 0.72 | 2.1 |
GTEx | Liver | 7 | 0.98 | 2.1 |
GTEx | Ovary | 7 | 0.77 | 2.1 |
GTEx | Pancreas | 12 | 0.74 | 2.1 |
GTEx | Pituitary | 7 | 0.63 | 2.1 |
GTEx | Prostate | 8 | 0.96 | 2.1 |
GTEx | Stomach | 9 | 0.62 | 2.1 |
GTEx | Vagina | 6 | 0.94 | 2.1 |
ROSMAP | Brain Pre-frontal Cortex | 27 | 0.61 | 2.1 |
GTEx | Adipose Visceral Omentum | 11 | 0.54 | 2.0 |
GTEx | Artery Aorta | 19 | 0.64 | 2.0 |
GTEx | Brain Caudate basal ganglia | 7 | 0.76 | 2.0 |
GTEx | Brain Cerebellar Hemisphere | 9 | 0.60 | 2.0 |
GTEx | Brain Nucleus accumbens basal ganglia | 7 | 0.81 | 2.0 |
GTEx | Breast Mammary Tissue | 14 | 0.71 | 2.0 |
GTEx | Breast Mammary Tissue (Male) | 10 | 0.84 | 2.0 |
GTEx | Esophagus Muscularis | 15 | 0.46 | 2.0 |
GTEx | Heart Atrial Appendage | 11 | 0.70 | 2.0 |
GTEx | Skin Not Sun Exposed Suprapubic | 14 | 0.57 | 2.0 |
GTEx | Spleen | 9 | 0.64 | 2.0 |
The Cancer Genome Atlas | Esophageal Carcinoma | 5 | 0.73 | 2.0 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 4 | 0.39 | 2.0 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 3 | 0.43 | 2.0 |
GTEx | Adipose Subcutaneous | 20 | 0.57 | 1.9 |
GTEx | Artery Tibial | 14 | 0.37 | 1.9 |
GTEx | Brain Cerebellum | 11 | 0.55 | 1.9 |
GTEx | Breast Mammary Tissue (Female) | 9 | 0.55 | 1.9 |
GTEx | Esophagus Mucosa | 16 | 0.48 | 1.9 |
GTEx | Lung | 20 | 0.70 | 1.9 |
GTEx | Muscle Skeletal | 14 | 0.48 | 1.9 |
GTEx | Nerve Tibial | 17 | 0.39 | 1.9 |
GTEx | Skin Sun Exposed Lower leg | 19 | 0.52 | 1.9 |
GTEx | Testis | 22 | 0.70 | 1.9 |
GTEx | Thyroid | 21 | 0.53 | 1.9 |
CommonMind | Brain Pre-frontal Cortex | 17 | 0.32 | 1.9 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 7 | 0.42 | 1.9 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 10 | 0.37 | 1.9 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 4 | 0.20 | 1.9 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 12 | 0.41 | 1.9 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 6 | 0.38 | 1.9 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 6 | 0.36 | 1.9 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 8 | 0.60 | 1.9 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 2 | 0.16 | 1.9 |
GTEx | Cells Transformed fibroblasts | 14 | 0.33 | 1.8 |
GTEx | Whole Blood | 11 | 0.55 | 1.8 |
NTR | Blood | 5 | 0.21 | 1.8 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 14 | 0.32 | 1.8 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 3 | 0.27 | 1.8 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 6 | 0.29 | 1.8 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 13 | 0.32 | 1.8 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 2 | 0.18 | 1.8 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 10 | 0.40 | 1.8 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 5 | 0.47 | 1.8 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 5 | 0.30 | 1.8 |
METSIM | Adipose | 7 | 0.15 | 1.7 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 12 | 0.28 | 1.7 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 10 | 0.22 | 1.7 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.19 | 1.7 |
The Cancer Genome Atlas | Thyroid Carcinoma | 12 | 0.23 | 1.7 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 1 | 0.20 | 1.7 |
YFS | Blood | 7 | 0.15 | 1.6 |