Best TWAS P=2.75e-08 · Best GWAS P=1.25e-07 conditioned to 0.274
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | SLC22A5 | 0.05 | 0.04 | lasso | 4 | 0.04 | 4.2e-04 | -5.1 | 5.1 | 2.8e-07 | 0.73 | 0.04 | 0.94 | FALSE |
2 | GTEx | Artery Aorta | P4HA2-AS1 | 0.08 | 0.03 | lasso | 3 | 0.01 | 6.6e-02 | -5.1 | -5.2 | 2.1e-07 | -0.68 | 0.05 | 0.89 | FALSE |
3 | GTEx | Artery Tibial | P4HA2 | 0.12 | 0.15 | lasso | 6 | 0.14 | 3.2e-11 | -5.2 | -5.1 | 2.7e-07 | -0.67 | 0.02 | 0.98 | FALSE |
4 | GTEx | Artery Tibial | P4HA2-AS1 | 0.10 | 0.09 | lasso | 4 | 0.11 | 1.0e-08 | -5.0 | -5.6 | 2.9e-08 | -0.74 | 0.02 | 0.98 | FALSE |
5 | GTEx | Cells Transformed fibroblasts | SLC22A5 | 0.32 | 0.28 | lasso | 7 | 0.35 | 1.6e-27 | 4.9 | 5.3 | 1.5e-07 | 0.88 | 0.06 | 0.93 | FALSE |
6 | GTEx | Esophagus Mucosa | SLC22A5 | 0.16 | 0.16 | enet | 8 | 0.16 | 6.3e-11 | -5.2 | 5.1 | 2.9e-07 | 0.74 | 0.02 | 0.97 | FALSE |
7 | GTEx | Heart Atrial Appendage | AC034220.3 | 0.16 | 0.09 | enet | 17 | 0.18 | 1.7e-08 | 4.5 | -5.2 | 1.7e-07 | -0.64 | 0.13 | 0.86 | FALSE |
8 | GTEx | Muscle Skeletal | MIR3936 | 0.04 | 0.01 | lasso | 4 | 0.00 | 9.9e-02 | 4.8 | -5.4 | 5.4e-08 | -0.77 | 0.07 | 0.70 | FALSE |
9 | GTEx | Skin Not Sun Exposed Suprapubic | PDLIM4 | 0.13 | 0.08 | lasso | 2 | 0.06 | 2.6e-04 | -5.2 | 5.5 | 4.4e-08 | 0.75 | 0.04 | 0.93 | FALSE |
10 | GTEx | Skin Sun Exposed Lower leg | PDLIM4 | 0.09 | 0.08 | lasso | 8 | 0.09 | 1.0e-07 | -4.9 | 5.6 | 2.8e-08 | 0.85 | 0.03 | 0.97 | TRUE |
11 | GTEx | Skin Sun Exposed Lower leg | SLC22A5 | 0.25 | 0.21 | lasso | 3 | 0.20 | 1.4e-16 | -5.1 | 5.2 | 2.2e-07 | 0.74 | 0.02 | 0.98 | FALSE |
12 | GTEx | Stomach | SLC22A5 | 0.09 | 0.04 | lasso | 4 | 0.01 | 9.0e-02 | 5.3 | 5.4 | 7.0e-08 | 0.96 | 0.05 | 0.70 | FALSE |
13 | GTEx | Testis | P4HA2 | 0.14 | 0.13 | lasso | 5 | 0.11 | 1.4e-05 | -4.9 | -5.2 | 1.7e-07 | -0.74 | 0.04 | 0.96 | FALSE |
14 | GTEx | Thyroid | P4HA2 | 0.08 | 0.07 | enet | 9 | 0.06 | 3.5e-05 | -5.2 | -5.3 | 1.3e-07 | -0.67 | 0.02 | 0.97 | FALSE |
15 | GTEx | Thyroid | PDLIM4 | 0.05 | 0.02 | enet | 5 | 0.01 | 3.1e-02 | -4.7 | 5.3 | 1.1e-07 | 0.62 | 0.06 | 0.87 | FALSE |
16 | GTEx | Thyroid | P4HA2-AS1 | 0.08 | 0.06 | enet | 14 | 0.05 | 1.6e-04 | -5.2 | -5.3 | 9.1e-08 | -0.61 | 0.02 | 0.97 | FALSE |
17 | GTEx | Whole Blood | SLC22A5 | 0.09 | 0.12 | lasso | 2 | 0.10 | 1.7e-09 | -5.2 | 5.2 | 1.6e-07 | 0.76 | 0.01 | 0.99 | FALSE |
18 | GTEx | Whole Blood | AC034220.3 | 0.08 | 0.05 | enet | 31 | 0.06 | 4.0e-06 | -5.0 | 5.4 | 5.8e-08 | 0.78 | 0.04 | 0.96 | FALSE |
19 | METSIM | Adipose | SLC22A5 | 0.05 | 0.08 | lasso | 1 | 0.08 | 1.0e-11 | -5.2 | 5.2 | 1.6e-07 | 0.76 | 0.02 | 0.98 | FALSE |
20 | YFS | Blood | SLC22A4 | 0.10 | 0.12 | enet | 47 | 0.14 | 5.1e-42 | 4.6 | 5.4 | 5.2e-08 | 0.72 | 0.20 | 0.79 | FALSE |
21 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | SLC22A5 | 0.06 | 0.05 | blup | 93 | 0.08 | 1.2e-09 | 4.6 | 5.4 | 8.4e-08 | 0.80 | 0.04 | 0.95 | FALSE |
22 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | SLC22A5 | 0.05 | 0.03 | blup | 93 | 0.05 | 1.9e-06 | 4.7 | 5.4 | 5.1e-08 | 0.84 | 0.04 | 0.95 | FALSE |
23 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PDLIM4 | 0.32 | 0.36 | enet | 13 | 0.37 | 3.8e-40 | 4.8 | 5.1 | 2.6e-07 | 0.68 | 0.05 | 0.94 | FALSE |
24 | The Cancer Genome Atlas | Thyroid Carcinoma | IRF1 | 0.05 | 0.02 | blup | 83 | 0.03 | 1.5e-03 | -4.9 | -5.1 | 3.1e-07 | -0.86 | 0.01 | 0.78 | FALSE |