Best TWAS P=4.17e-24 · Best GWAS P=7.14e-26 conditioned to 5.15e-14
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | L3MBTL3 | 0.20 | 0.08 | lasso | 4 | 0.09 | 1.1e-07 | 9.6 | 9.3 | 2.1e-20 | -0.32 | 0.92 | 0.08 | FALSE |
2 | GTEx | Adipose Visceral Omentum | L3MBTL3 | 0.14 | 0.12 | lasso | 2 | 0.15 | 2.8e-08 | 9.6 | 9.7 | 2.7e-22 | -0.32 | 0.92 | 0.04 | FALSE |
3 | GTEx | Breast Mammary Tissue | L3MBTL3 | 0.31 | 0.25 | lasso | 7 | 0.23 | 2.8e-12 | 9.6 | 9.7 | 4.3e-22 | -0.29 | 0.93 | 0.07 | FALSE |
4 | GTEx | Breast Mammary Tissue | RP11-73O6.3 | 0.27 | 0.22 | lasso | 9 | 0.22 | 1.5e-11 | 9.6 | 9.8 | 1.1e-22 | -0.29 | 0.92 | 0.08 | FALSE |
5 | GTEx | Breast Mammary Tissue (Male) | L3MBTL3 | 0.31 | 0.24 | lasso | 6 | 0.23 | 5.5e-06 | 9.6 | 9.4 | 4.8e-21 | -0.33 | 0.27 | 0.06 | FALSE |
6 | GTEx | Breast Mammary Tissue (Male) | RP11-73O6.3 | 0.33 | 0.17 | lasso | 4 | 0.12 | 1.3e-03 | 9.6 | 9.1 | 6.7e-20 | -0.30 | 0.16 | 0.05 | FALSE |
7 | GTEx | Breast Mammary Tissue (Female) | L3MBTL3 | 0.30 | 0.13 | lasso | 5 | 0.14 | 4.5e-05 | 7.2 | 9.6 | 1.1e-21 | -0.28 | 0.36 | 0.13 | FALSE |
8 | GTEx | Breast Mammary Tissue (Female) | RP11-73O6.3 | 0.29 | 0.08 | lasso | 5 | 0.10 | 5.7e-04 | 8.8 | 9.8 | 1.2e-22 | -0.32 | 0.29 | 0.11 | FALSE |
9 | GTEx | Cells EBV-transformed lymphocytes | L3MBTL3 | 0.28 | 0.08 | lasso | 10 | 0.03 | 4.4e-02 | 9.6 | 9.4 | 4.2e-21 | -0.36 | 0.21 | 0.10 | FALSE |
10 | GTEx | Colon Transverse | L3MBTL3 | 0.27 | 0.13 | lasso | 8 | 0.20 | 8.0e-10 | 9.6 | 9.8 | 1.7e-22 | -0.35 | 0.97 | 0.03 | FALSE |
11 | GTEx | Colon Transverse | RP11-73O6.3 | 0.19 | 0.09 | lasso | 2 | 0.06 | 1.2e-03 | 9.6 | 9.7 | 3.1e-22 | -0.33 | 0.50 | 0.05 | FALSE |
12 | GTEx | Esophagus Mucosa | L3MBTL3 | 0.26 | 0.18 | lasso | 2 | 0.23 | 2.7e-15 | 8.8 | 9.9 | 4.0e-23 | -0.32 | 0.96 | 0.04 | FALSE |
13 | GTEx | Lung | L3MBTL3 | 0.37 | 0.34 | lasso | 4 | 0.38 | 4.1e-30 | 9.6 | 9.8 | 6.9e-23 | -0.32 | 0.90 | 0.10 | FALSE |
14 | GTEx | Lung | RP11-73O6.3 | 0.15 | 0.08 | lasso | 5 | 0.12 | 2.2e-09 | 9.6 | 9.7 | 3.7e-22 | -0.32 | 0.97 | 0.02 | FALSE |
15 | GTEx | Nerve Tibial | L3MBTL3 | 0.30 | 0.23 | lasso | 4 | 0.22 | 2.3e-15 | 9.6 | 9.9 | 5.5e-23 | -0.31 | 0.90 | 0.10 | FALSE |
16 | GTEx | Pancreas | L3MBTL3 | 0.32 | 0.17 | lasso | 4 | 0.23 | 4.4e-10 | 9.6 | 9.8 | 7.7e-23 | -0.32 | 0.90 | 0.09 | FALSE |
17 | GTEx | Pituitary | L3MBTL3 | 0.45 | 0.31 | lasso | 8 | 0.29 | 5.1e-08 | 7.2 | 8.5 | 1.7e-17 | -0.15 | 0.85 | 0.02 | FALSE |
18 | GTEx | Pituitary | RP11-73O6.3 | 0.48 | 0.07 | lasso | 7 | 0.16 | 8.2e-05 | 7.2 | 7.3 | 2.9e-13 | -0.09 | 0.42 | 0.04 | FALSE |
19 | GTEx | Prostate | L3MBTL3 | 0.35 | 0.27 | lasso | 5 | 0.17 | 5.9e-05 | 9.6 | 9.5 | 2.0e-21 | -0.30 | 0.26 | 0.05 | FALSE |
20 | GTEx | Skin Not Sun Exposed Suprapubic | L3MBTL3 | 0.26 | 0.12 | lasso | 4 | 0.12 | 4.0e-07 | 7.9 | 9.5 | 1.4e-21 | -0.34 | 0.86 | 0.10 | FALSE |
21 | GTEx | Skin Sun Exposed Lower leg | L3MBTL3 | 0.25 | 0.25 | lasso | 9 | 0.24 | 1.4e-19 | 9.6 | 9.4 | 4.3e-21 | -0.27 | 0.90 | 0.10 | FALSE |
22 | GTEx | Small Intestine Terminal Ileum | L3MBTL3 | 0.37 | 0.20 | lasso | 4 | 0.17 | 1.3e-04 | 9.6 | 10.0 | 2.2e-23 | -0.35 | 0.18 | 0.06 | FALSE |
23 | GTEx | Spleen | L3MBTL3 | 0.64 | 0.34 | enet | 14 | 0.48 | 6.4e-14 | 8.8 | 9.7 | 3.7e-22 | -0.33 | 0.98 | 0.01 | FALSE |
24 | GTEx | Spleen | RP11-73O6.3 | 0.45 | 0.43 | enet | 21 | 0.42 | 7.7e-12 | 8.8 | 9.5 | 1.6e-21 | -0.29 | 0.98 | 0.00 | FALSE |
25 | GTEx | Stomach | L3MBTL3 | 0.36 | 0.18 | enet | 27 | 0.20 | 1.1e-09 | 8.6 | 8.8 | 1.2e-18 | -0.40 | 0.99 | 0.01 | FALSE |
26 | GTEx | Stomach | RP11-73O6.3 | 0.21 | 0.12 | lasso | 6 | 0.06 | 5.9e-04 | 8.6 | 7.7 | 2.0e-14 | -0.39 | 0.27 | 0.04 | FALSE |
27 | GTEx | Testis | L3MBTL3 | 0.41 | 0.22 | lasso | 8 | 0.30 | 9.2e-14 | 9.6 | 9.4 | 3.3e-21 | -0.35 | 0.88 | 0.11 | FALSE |
28 | GTEx | Thyroid | L3MBTL3 | 0.40 | 0.39 | enet | 9 | 0.43 | 2.8e-35 | 9.6 | 10.1 | 7.1e-24 | -0.36 | 0.90 | 0.10 | TRUE |
29 | GTEx | Thyroid | RP11-73O6.3 | 0.18 | 0.15 | lasso | 3 | 0.20 | 2.3e-15 | 8.1 | 9.6 | 8.6e-22 | -0.32 | 0.98 | 0.02 | FALSE |
30 | GTEx | Whole Blood | L3MBTL3 | 0.22 | 0.20 | lasso | 9 | 0.20 | 5.1e-18 | 9.6 | 9.9 | 3.7e-23 | -0.33 | 0.90 | 0.10 | FALSE |
31 | GTEx | Whole Blood | RP11-73O6.3 | 0.15 | 0.06 | lasso | 8 | 0.04 | 1.1e-04 | 9.6 | 10.1 | 4.2e-24 | -0.34 | 0.42 | 0.14 | FALSE |
32 | METSIM | Adipose | L3MBTL3 | 0.13 | 0.12 | enet | 22 | 0.12 | 4.8e-18 | 8.8 | 8.2 | 2.3e-16 | -0.20 | 1.00 | 0.00 | FALSE |
33 | ROSMAP | Brain Pre-frontal Cortex | EPB41L2 | 0.12 | 0.12 | blup | 522 | 0.10 | 6.5e-13 | 4.3 | 5.2 | 2.2e-07 | 0.01 | 0.99 | 0.01 | FALSE |
34 | ROSMAP | Brain Pre-frontal Cortex | L3MBTL3 | 0.14 | 0.07 | blup | 609 | 0.08 | 3.8e-10 | 9.6 | 8.4 | 3.4e-17 | -0.37 | 0.92 | 0.08 | FALSE |
35 | YFS | Blood | L3MBTL3 | 0.28 | 0.22 | blup | 614 | 0.27 | 1.2e-88 | 8.8 | 7.3 | 2.2e-13 | -0.22 | 1.00 | 0.00 | FALSE |
36 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | L3MBTL3 | 0.06 | 0.01 | blup | 114 | 0.04 | 4.0e-03 | 8.8 | 7.1 | 1.2e-12 | -0.10 | 0.13 | 0.03 | FALSE |
37 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | LOC285733 | 0.22 | 0.19 | enet | 9 | 0.19 | 3.9e-11 | 6.0 | 6.1 | 8.7e-10 | 0.02 | 0.02 | 0.98 | TRUE |