Best TWAS P=5.27e-12 · Best GWAS P=2.96e-09 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Aorta | P4HA2 | 0.12 | 0.14 | lasso | 2 | 0.11 | 1.2e-06 | 5.9 | 5.9 | 2.9e-09 | 1.00 | 0.01 | 0.99 | FALSE |
2 | GTEx | Artery Aorta | AC034220.3 | 0.08 | 0.06 | lasso | 3 | 0.05 | 1.1e-03 | -4.4 | 5.4 | 6.9e-08 | 0.74 | 0.36 | 0.46 | FALSE |
3 | GTEx | Artery Aorta | P4HA2-AS1 | 0.08 | 0.03 | lasso | 3 | 0.01 | 6.6e-02 | 5.8 | 5.8 | 6.1e-09 | 0.96 | 0.02 | 0.96 | FALSE |
4 | GTEx | Artery Tibial | P4HA2 | 0.12 | 0.15 | lasso | 6 | 0.14 | 3.2e-11 | 5.9 | 5.8 | 5.0e-09 | 0.96 | 0.01 | 0.99 | FALSE |
5 | GTEx | Artery Tibial | P4HA2-AS1 | 0.10 | 0.09 | lasso | 4 | 0.11 | 1.0e-08 | 5.8 | 5.6 | 1.7e-08 | 0.93 | 0.01 | 0.99 | FALSE |
6 | GTEx | Cells Transformed fibroblasts | SLC22A5 | 0.32 | 0.28 | lasso | 7 | 0.35 | 1.6e-27 | -4.8 | -5.2 | 2.5e-07 | -0.84 | 0.46 | 0.54 | FALSE |
7 | GTEx | Esophagus Mucosa | P4HA2 | 0.23 | 0.10 | lasso | 6 | 0.14 | 6.1e-10 | 5.9 | 6.9 | 5.3e-12 | 0.95 | 0.01 | 0.99 | TRUE |
8 | GTEx | Esophagus Mucosa | SLC22A5 | 0.16 | 0.16 | enet | 8 | 0.16 | 6.3e-11 | 5.4 | -5.4 | 5.7e-08 | -0.95 | 0.02 | 0.98 | FALSE |
9 | GTEx | Esophagus Mucosa | P4HA2-AS1 | 0.09 | 0.06 | lasso | 6 | 0.08 | 5.4e-06 | 5.9 | 6.1 | 1.1e-09 | 0.97 | 0.01 | 0.99 | FALSE |
10 | GTEx | Heart Atrial Appendage | AC034220.3 | 0.16 | 0.09 | enet | 17 | 0.18 | 1.7e-08 | -4.3 | 5.2 | 2.4e-07 | 0.77 | 0.36 | 0.64 | FALSE |
11 | GTEx | Heart Left Ventricle | AC034220.3 | 0.25 | 0.22 | lasso | 6 | 0.25 | 8.6e-14 | -4.4 | 5.3 | 1.1e-07 | 0.70 | 0.90 | 0.09 | FALSE |
12 | GTEx | Lung | SLC22A5 | 0.10 | 0.15 | enet | 11 | 0.13 | 3.4e-10 | 5.4 | -5.2 | 1.6e-07 | -0.93 | 0.06 | 0.94 | FALSE |
13 | GTEx | Muscle Skeletal | MIR3936 | 0.04 | 0.01 | lasso | 4 | 0.00 | 9.9e-02 | -4.6 | 5.4 | 7.7e-08 | 0.82 | 0.09 | 0.65 | FALSE |
14 | GTEx | Nerve Tibial | P4HA2 | 0.19 | 0.12 | enet | 26 | 0.14 | 6.2e-10 | -4.3 | 5.5 | 3.7e-08 | 0.85 | 0.02 | 0.98 | FALSE |
15 | GTEx | Nerve Tibial | P4HA2-AS1 | 0.14 | 0.05 | lasso | 8 | 0.08 | 3.8e-06 | 5.6 | 5.5 | 4.5e-08 | 0.88 | 0.02 | 0.98 | FALSE |
16 | GTEx | Ovary | AC004041.2 | 0.21 | -0.01 | lasso | 2 | -0.01 | 7.7e-01 | -4.3 | 5.6 | 2.4e-08 | 0.62 | 0.06 | 0.28 | FALSE |
17 | GTEx | Skin Not Sun Exposed Suprapubic | SLC22A5 | 0.13 | 0.05 | lasso | 8 | 0.05 | 8.3e-04 | -4.2 | -5.3 | 1.5e-07 | -0.82 | 0.16 | 0.83 | FALSE |
18 | GTEx | Skin Sun Exposed Lower leg | PDLIM4 | 0.09 | 0.08 | lasso | 8 | 0.09 | 1.0e-07 | 5.9 | -5.8 | 8.0e-09 | -0.92 | 0.02 | 0.98 | FALSE |
19 | GTEx | Skin Sun Exposed Lower leg | SLC22A5 | 0.25 | 0.21 | lasso | 3 | 0.20 | 1.4e-16 | 5.3 | -5.2 | 1.7e-07 | -0.90 | 0.14 | 0.86 | FALSE |
20 | GTEx | Spleen | SLC22A5 | 0.26 | 0.28 | lasso | 4 | 0.28 | 6.6e-08 | 5.4 | 5.5 | 3.4e-08 | 0.88 | 0.08 | 0.81 | FALSE |
21 | GTEx | Testis | P4HA2 | 0.14 | 0.13 | lasso | 5 | 0.11 | 1.4e-05 | 5.9 | 5.5 | 2.9e-08 | 0.98 | 0.01 | 0.99 | FALSE |
22 | GTEx | Thyroid | P4HA2 | 0.08 | 0.07 | enet | 9 | 0.06 | 3.5e-05 | 5.9 | 5.8 | 8.6e-09 | 0.95 | 0.01 | 0.99 | FALSE |
23 | GTEx | Thyroid | PDLIM4 | 0.05 | 0.02 | enet | 5 | 0.01 | 3.1e-02 | 5.6 | -5.7 | 1.3e-08 | -0.88 | 0.03 | 0.93 | FALSE |
24 | GTEx | Thyroid | P4HA2-AS1 | 0.08 | 0.06 | enet | 14 | 0.05 | 1.6e-04 | 5.9 | 5.2 | 1.6e-07 | 0.89 | 0.01 | 0.99 | FALSE |
25 | GTEx | Whole Blood | SLC22A5 | 0.09 | 0.12 | lasso | 2 | 0.10 | 1.7e-09 | 5.4 | -5.4 | 5.1e-08 | -0.90 | 0.08 | 0.92 | FALSE |
26 | METSIM | Adipose | PDLIM4 | 0.05 | 0.04 | lasso | 4 | 0.02 | 2.8e-04 | 5.7 | -5.8 | 6.8e-09 | -0.83 | 0.03 | 0.97 | FALSE |
27 | METSIM | Adipose | SLC22A5 | 0.05 | 0.08 | lasso | 1 | 0.08 | 1.0e-11 | 5.4 | -5.4 | 5.1e-08 | -0.90 | 0.09 | 0.91 | FALSE |
28 | ROSMAP | Brain Pre-frontal Cortex | SLC22A4 | 0.03 | 0.05 | lasso | 2 | 0.04 | 1.2e-05 | -5.2 | -5.9 | 4.0e-09 | -0.72 | 0.24 | 0.72 | FALSE |
29 | YFS | Blood | SLC22A5 | 0.38 | 0.36 | bslmm | 430 | 0.37 | 3.0e-128 | 5.4 | -5.8 | 7.0e-09 | -0.88 | 0.08 | 0.92 | FALSE |
30 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | SLC22A5 | 0.05 | 0.03 | blup | 93 | 0.05 | 1.9e-06 | -4.1 | -5.1 | 2.8e-07 | -0.74 | 0.04 | 0.96 | FALSE |
31 | The Cancer Genome Atlas | Thyroid Carcinoma | P4HA2 | 0.21 | 0.35 | enet | 10 | 0.35 | 4.7e-35 | 5.8 | 5.5 | 4.8e-08 | 0.95 | 0.01 | 0.99 | FALSE |