Best TWAS P=2.14e-15 · Best GWAS P=2.51e-15 conditioned to 1
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Adipose Subcutaneous | GNA12 | 0.11 | 0.08 | lasso | 4 | 0.07 | 1.3e-06 | -5.9 | -6.3 | 2.7e-10 | 0.76 | 0.11 | 0.89 | FALSE |
| 2 | GTEx | Artery Tibial | GNA12 | 0.24 | 0.13 | enet | 20 | 0.22 | 3.5e-17 | -7.6 | -7.8 | 8.0e-15 | 0.84 | 0.03 | 0.97 | FALSE |
| 3 | GTEx | Cells EBV-transformed lymphocytes | GNA12 | 0.46 | 0.51 | lasso | 5 | 0.50 | 7.9e-19 | -7.9 | -7.9 | 2.1e-15 | 0.99 | 0.00 | 1.00 | TRUE |
| 4 | GTEx | Cells Transformed fibroblasts | GNA12 | 0.21 | 0.11 | lasso | 11 | 0.15 | 1.7e-11 | -7.7 | -6.4 | 1.7e-10 | 0.86 | 0.02 | 0.98 | FALSE |
| 5 | GTEx | Colon Sigmoid | GNA12 | 0.14 | 0.05 | lasso | 3 | 0.03 | 3.6e-02 | -5.7 | -7.3 | 2.1e-13 | 0.87 | 0.03 | 0.91 | FALSE |
| 6 | GTEx | Colon Transverse | GNA12 | 0.19 | 0.08 | lasso | 4 | 0.10 | 2.3e-05 | 5.8 | -6.3 | 3.0e-10 | 0.58 | 0.30 | 0.68 | FALSE |
| 7 | GTEx | Esophagus Gastroesophageal Junction | GNA12 | 0.20 | 0.12 | lasso | 6 | 0.12 | 3.4e-05 | -5.9 | -7.2 | 7.4e-13 | 0.86 | 0.04 | 0.95 | FALSE |
| 8 | GTEx | Esophagus Mucosa | GNA12 | 0.16 | 0.13 | lasso | 3 | 0.13 | 3.0e-09 | -7.7 | -7.5 | 7.0e-14 | 0.87 | 0.02 | 0.98 | FALSE |
| 9 | GTEx | Esophagus Muscularis | GNA12 | 0.32 | 0.31 | lasso | 3 | 0.34 | 2.1e-21 | -7.6 | -7.7 | 1.8e-14 | 0.94 | 0.02 | 0.98 | FALSE |
| 10 | GTEx | Heart Atrial Appendage | SDK1 | 0.22 | -0.01 | lasso | 10 | 0.01 | 1.4e-01 | -4.8 | 5.6 | 1.6e-08 | 0.03 | 0.15 | 0.04 | TRUE |
| 11 | GTEx | Lung | GNA12 | 0.16 | 0.08 | enet | 21 | 0.12 | 1.2e-09 | -7.6 | -6.3 | 3.4e-10 | 0.78 | 0.01 | 0.99 | FALSE |
| 12 | GTEx | Nerve Tibial | GNA12 | 0.31 | 0.34 | lasso | 7 | 0.36 | 9.6e-27 | -6.0 | -7.0 | 2.0e-12 | 0.86 | 0.78 | 0.22 | FALSE |
| 13 | GTEx | Skin Sun Exposed Lower leg | GNA12 | 0.17 | 0.16 | lasso | 3 | 0.18 | 1.3e-14 | -6.0 | -7.1 | 1.3e-12 | 0.87 | 0.17 | 0.83 | FALSE |
| 14 | GTEx | Small Intestine Terminal Ileum | GNA12 | 0.34 | 0.20 | lasso | 5 | 0.16 | 2.4e-04 | -5.7 | -5.4 | 8.0e-08 | 0.72 | 0.06 | 0.80 | FALSE |
| 15 | GTEx | Stomach | GNA12 | 0.18 | 0.16 | lasso | 2 | 0.13 | 6.6e-07 | -5.7 | -5.8 | 5.3e-09 | 0.70 | 0.26 | 0.73 | FALSE |
| 16 | GTEx | Whole Blood | GNA12 | 0.09 | 0.01 | enet | 4 | 0.00 | 3.3e-01 | -7.5 | -7.6 | 3.5e-14 | 0.94 | 0.02 | 0.91 | FALSE |
| 17 | METSIM | Adipose | GNA12 | 0.07 | 0.05 | lasso | 3 | 0.05 | 3.3e-08 | -5.7 | -5.8 | 5.9e-09 | 0.72 | 0.28 | 0.72 | FALSE |
| 18 | ROSMAP | Brain Pre-frontal Cortex | AMZ1 | 0.09 | 0.05 | lasso | 6 | 0.04 | 2.4e-06 | -7.6 | 7.5 | 8.6e-14 | -0.90 | 0.02 | 0.98 | FALSE |
| 19 | The Cancer Genome Atlas | Esophageal Carcinoma | AMZ1 | 0.18 | 0.05 | blup | 69 | 0.05 | 1.4e-02 | 3.9 | -6.1 | 8.7e-10 | 0.71 | 0.01 | 0.66 | FALSE |
| 20 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | GNA12 | 0.03 | 0.04 | lasso | 1 | 0.04 | 3.0e-05 | -5.9 | -5.9 | 4.8e-09 | 0.72 | 0.07 | 0.79 | FALSE |
| 21 | The Cancer Genome Atlas | Lung Adenocarcinoma | GNA12 | 0.03 | 0.01 | enet | 7 | 0.02 | 1.5e-03 | 4.7 | -7.2 | 5.6e-13 | 0.78 | 0.06 | 0.75 | FALSE |