Best TWAS P=1.54e-13 · Best GWAS P=2.31e-14 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | RAB24 | 0.14 | 0.06 | enet | 14 | 0.09 | 4.2e-11 | 4.8 | 5.7 | 1.0e-08 | 0.18 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Subcutaneous | RAB24 | 0.17 | 0.08 | enet | 26 | 0.14 | 1.7e-11 | 4.8 | 6.1 | 9.4e-10 | 0.44 | 0.99 | 0.01 | FALSE |
3 | GTEx | Adipose Subcutaneous | MXD3 | 0.16 | 0.05 | enet | 13 | 0.06 | 1.7e-05 | 6.4 | 6.4 | 1.2e-10 | 0.77 | 0.02 | 0.98 | FALSE |
4 | GTEx | Adipose Visceral Omentum | MXD3 | 0.33 | 0.06 | lasso | 6 | 0.05 | 9.1e-04 | 6.4 | 5.7 | 9.7e-09 | 0.84 | 0.04 | 0.88 | FALSE |
5 | GTEx | Artery Aorta | MXD3 | 0.36 | 0.22 | enet | 45 | 0.29 | 2.4e-16 | 6.4 | 5.1 | 2.7e-07 | 0.72 | 0.03 | 0.97 | FALSE |
6 | GTEx | Artery Tibial | RAB24 | 0.18 | 0.09 | lasso | 3 | 0.07 | 2.3e-06 | 4.8 | 6.3 | 3.0e-10 | 0.49 | 0.99 | 0.00 | FALSE |
7 | GTEx | Artery Tibial | MXD3 | 0.12 | 0.13 | enet | 5 | 0.12 | 7.0e-10 | 6.4 | 6.7 | 2.9e-11 | 0.89 | 0.18 | 0.82 | FALSE |
8 | GTEx | Brain Cerebellum | MXD3 | 0.28 | 0.31 | lasso | 2 | 0.30 | 1.6e-09 | 6.4 | 6.4 | 1.4e-10 | 0.87 | 0.09 | 0.90 | FALSE |
9 | GTEx | Brain Cortex | MXD3 | 0.47 | 0.20 | lasso | 10 | 0.22 | 7.7e-07 | 6.4 | 5.5 | 4.8e-08 | 0.78 | 0.06 | 0.60 | FALSE |
10 | GTEx | Brain Nucleus accumbens basal ganglia | MXD3 | 0.24 | 0.14 | enet | 10 | 0.25 | 2.9e-07 | 6.4 | 6.3 | 2.1e-10 | 0.83 | 0.05 | 0.82 | FALSE |
11 | GTEx | Breast Mammary Tissue | MXD3 | 0.26 | 0.08 | lasso | 5 | 0.10 | 1.3e-05 | 6.4 | 6.7 | 2.1e-11 | 0.86 | 0.00 | 1.00 | FALSE |
12 | GTEx | Breast Mammary Tissue (Female) | MXD3 | 0.23 | 0.08 | lasso | 3 | 0.09 | 1.1e-03 | 7.6 | 6.5 | 1.0e-10 | 0.82 | 0.01 | 0.92 | FALSE |
13 | GTEx | Colon Sigmoid | MXD3 | 0.35 | 0.27 | lasso | 9 | 0.29 | 6.3e-11 | 6.4 | 6.5 | 7.5e-11 | 0.90 | 0.04 | 0.96 | FALSE |
14 | GTEx | Colon Transverse | PRELID1 | 0.31 | 0.28 | lasso | 4 | 0.26 | 1.1e-12 | 6.4 | -6.6 | 5.4e-11 | -0.90 | 0.03 | 0.97 | FALSE |
15 | GTEx | Colon Transverse | MXD3 | 0.22 | 0.09 | lasso | 5 | 0.13 | 8.2e-07 | 4.7 | 5.1 | 2.7e-07 | 0.73 | 0.07 | 0.93 | FALSE |
16 | GTEx | Esophagus Gastroesophageal Junction | MXD3 | 0.17 | 0.12 | lasso | 3 | 0.08 | 9.5e-04 | 6.4 | 5.4 | 5.2e-08 | 0.78 | 0.03 | 0.62 | FALSE |
17 | GTEx | Esophagus Mucosa | UIMC1 | 0.08 | 0.00 | lasso | 5 | 0.00 | 3.5e-01 | -6.4 | -6.5 | 8.5e-11 | -0.19 | 0.13 | 0.04 | TRUE |
18 | GTEx | Esophagus Mucosa | FGFR4 | 0.18 | 0.16 | enet | 8 | 0.16 | 9.2e-11 | -6.4 | -6.2 | 6.8e-10 | -0.21 | 0.85 | 0.15 | FALSE |
19 | GTEx | Esophagus Mucosa | MXD3 | 0.16 | 0.14 | lasso | 8 | 0.15 | 1.7e-10 | 6.4 | 6.3 | 3.2e-10 | 0.85 | 0.25 | 0.75 | FALSE |
20 | GTEx | Esophagus Muscularis | MXD3 | 0.27 | 0.20 | enet | 10 | 0.24 | 1.6e-14 | 6.4 | 6.7 | 2.4e-11 | 0.91 | 0.08 | 0.92 | FALSE |
21 | GTEx | Heart Atrial Appendage | MXD3 | 0.33 | 0.15 | enet | 24 | 0.16 | 1.5e-07 | 6.4 | 6.1 | 8.7e-10 | 0.76 | 0.00 | 1.00 | FALSE |
22 | GTEx | Heart Left Ventricle | MXD3 | 0.17 | 0.03 | lasso | 3 | 0.03 | 1.5e-02 | 6.4 | 6.4 | 1.5e-10 | 0.86 | 0.10 | 0.34 | FALSE |
23 | GTEx | Liver | PRELID1 | 0.22 | 0.25 | lasso | 3 | 0.24 | 2.4e-07 | 7.6 | -7.4 | 1.5e-13 | -0.98 | 0.00 | 1.00 | TRUE |
24 | GTEx | Lung | MXD3 | 0.20 | 0.12 | lasso | 10 | 0.12 | 1.8e-09 | 6.4 | 6.6 | 4.7e-11 | 0.85 | 0.12 | 0.88 | FALSE |
25 | GTEx | Nerve Tibial | FGFR4 | 0.44 | 0.48 | lasso | 7 | 0.47 | 2.1e-37 | -6.4 | -6.3 | 3.3e-10 | -0.19 | 0.85 | 0.15 | FALSE |
26 | GTEx | Nerve Tibial | RAB24 | 0.27 | 0.08 | enet | 32 | 0.17 | 6.3e-12 | 2.0 | 7.0 | 2.5e-12 | 0.52 | 0.77 | 0.12 | TRUE |
27 | GTEx | Nerve Tibial | MXD3 | 0.26 | 0.17 | lasso | 7 | 0.28 | 6.9e-20 | 6.4 | 6.9 | 3.9e-12 | 0.87 | 0.04 | 0.96 | FALSE |
28 | GTEx | Pituitary | MXD3 | 0.25 | 0.20 | lasso | 6 | 0.16 | 7.5e-05 | 6.0 | 6.5 | 5.7e-11 | 0.74 | 0.03 | 0.91 | FALSE |
29 | GTEx | Skin Not Sun Exposed Suprapubic | FGFR4 | 0.19 | 0.11 | lasso | 5 | 0.11 | 8.3e-07 | -6.4 | -5.4 | 7.8e-08 | -0.18 | 0.80 | 0.12 | FALSE |
30 | GTEx | Skin Not Sun Exposed Suprapubic | MXD3 | 0.22 | 0.18 | lasso | 3 | 0.17 | 1.8e-09 | 6.4 | 7.0 | 2.6e-12 | 0.94 | 0.01 | 0.99 | FALSE |
31 | GTEx | Skin Sun Exposed Lower leg | PRELID1 | 0.06 | 0.02 | enet | 5 | 0.03 | 3.4e-03 | 6.4 | -6.6 | 4.0e-11 | -0.92 | 0.01 | 0.99 | FALSE |
32 | GTEx | Skin Sun Exposed Lower leg | MXD3 | 0.19 | 0.14 | lasso | 6 | 0.12 | 4.2e-10 | 7.6 | 7.0 | 2.5e-12 | 0.91 | 0.00 | 1.00 | FALSE |
33 | GTEx | Small Intestine Terminal Ileum | PRELID1 | 0.47 | 0.16 | enet | 10 | 0.13 | 7.6e-04 | 7.6 | -7.1 | 9.3e-13 | -0.94 | 0.00 | 0.97 | FALSE |
34 | GTEx | Stomach | MXD3 | 0.21 | 0.03 | lasso | 7 | 0.08 | 1.4e-04 | 4.3 | 5.2 | 2.2e-07 | 0.76 | 0.07 | 0.88 | FALSE |
35 | GTEx | Testis | DBN1 | 0.10 | 0.00 | lasso | 6 | 0.00 | 4.6e-01 | 6.1 | -5.3 | 9.0e-08 | -0.66 | 0.03 | 0.55 | FALSE |
36 | GTEx | Thyroid | MXD3 | 0.31 | 0.17 | lasso | 8 | 0.24 | 1.1e-18 | 6.4 | 7.1 | 1.5e-12 | 0.91 | 0.00 | 1.00 | FALSE |
37 | METSIM | Adipose | MXD3 | 0.18 | 0.18 | lasso | 3 | 0.21 | 1.3e-30 | 6.4 | 6.6 | 4.9e-11 | 0.86 | 0.68 | 0.32 | FALSE |
38 | METSIM | Adipose | ZNF346 | 0.04 | 0.00 | blup | 373 | 0.03 | 9.6e-05 | 5.0 | 5.3 | 1.2e-07 | 0.38 | 0.67 | 0.04 | FALSE |
39 | YFS | Blood | MXD3 | 0.04 | 0.03 | lasso | 4 | 0.04 | 5.8e-13 | -2.6 | 5.3 | 8.7e-08 | 0.58 | 0.39 | 0.61 | FALSE |
40 | The Cancer Genome Atlas | Colon Adenocarcinoma | PRELID1 | 0.09 | 0.01 | blup | 38 | 0.05 | 1.1e-03 | 6.8 | -5.1 | 2.8e-07 | -0.74 | 0.01 | 0.88 | FALSE |
41 | The Cancer Genome Atlas | Colon Adenocarcinoma | RAB24 | 0.08 | 0.04 | enet | 7 | 0.06 | 3.4e-04 | -2.9 | 6.2 | 6.6e-10 | 0.57 | 0.04 | 0.10 | FALSE |
42 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | FGFR4 | 0.08 | 0.06 | blup | 46 | 0.07 | 2.5e-08 | 3.8 | -6.3 | 3.3e-10 | -0.39 | 0.17 | 0.82 | FALSE |
43 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | LMAN2 | 0.04 | 0.00 | blup | 46 | 0.00 | 1.6e-01 | 7.6 | -5.7 | 9.6e-09 | -0.77 | 0.00 | 0.91 | FALSE |
44 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PRELID1 | 0.24 | 0.11 | lasso | 5 | 0.10 | 1.2e-11 | 6.8 | -6.7 | 3.0e-11 | -0.88 | 0.31 | 0.69 | FALSE |
45 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PRELID1 | 0.33 | 0.08 | enet | 4 | 0.08 | 2.7e-05 | 6.4 | -6.6 | 3.8e-11 | -0.90 | 0.14 | 0.73 | FALSE |
46 | The Cancer Genome Atlas | Brain Lower Grade Glioma | FGFR4 | 0.06 | 0.02 | enet | 7 | 0.05 | 1.2e-06 | -2.1 | -5.7 | 1.5e-08 | -0.27 | 0.04 | 0.91 | FALSE |
47 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | PRELID1 | 0.08 | 0.10 | lasso | 4 | 0.07 | 2.9e-04 | 5.9 | -6.1 | 8.2e-10 | -0.83 | 0.02 | 0.92 | FALSE |
48 | The Cancer Genome Atlas | Lung Adenocarcinoma | MXD3 | 0.04 | 0.02 | blup | 41 | 0.02 | 5.6e-04 | 4.6 | 5.5 | 3.7e-08 | 0.79 | 0.11 | 0.56 | FALSE |
49 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MXD3 | 0.04 | 0.02 | blup | 40 | 0.03 | 2.8e-04 | 6.4 | 6.2 | 5.4e-10 | 0.84 | 0.10 | 0.77 | FALSE |