Best TWAS P=4.27e-10 · Best GWAS P=2.17e-12 conditioned to 4.81e-06
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Lung | NFATC3 | 0.04 | 0.01 | lasso | 4 | 0.01 | 4.1e-02 | 5.9 | -6.2 | 4.3e-10 | -0.32 | 0.25 | 0.21 | TRUE |
| 2 | GTEx | Thyroid | PLA2G15 | 0.06 | 0.04 | enet | 5 | 0.04 | 5.7e-04 | 6.3 | 6.2 | 4.3e-10 | 0.38 | 0.24 | 0.68 | FALSE |
| 3 | The Cancer Genome Atlas | Colon Adenocarcinoma | NFATC3 | 0.22 | 0.05 | lasso | 3 | 0.06 | 3.6e-04 | 3.6 | -5.8 | 8.8e-09 | -0.35 | 0.00 | 0.98 | FALSE |
| 4 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | NFATC3 | 0.11 | 0.04 | enet | 4 | 0.04 | 2.8e-05 | 6.4 | -6.2 | 4.7e-10 | -0.36 | 0.00 | 0.99 | FALSE |
| 5 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NFATC3 | 0.23 | 0.05 | lasso | 2 | 0.06 | 8.5e-08 | 6.4 | -5.7 | 1.4e-08 | -0.31 | 0.00 | 1.00 | FALSE |
| 6 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | AGRP | 0.11 | 0.01 | enet | 6 | 0.07 | 2.5e-05 | 5.5 | -6.2 | 6.3e-10 | -0.12 | 0.00 | 0.73 | TRUE |
| 7 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | NFATC3 | 0.26 | 0.09 | enet | 4 | 0.13 | 9.8e-06 | 6.4 | -5.2 | 1.7e-07 | -0.29 | 0.00 | 0.97 | FALSE |
| 8 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | NFATC3 | 0.46 | 0.16 | lasso | 4 | 0.20 | 1.7e-07 | -3.5 | -5.4 | 6.1e-08 | -0.33 | 0.01 | 0.98 | FALSE |