Best TWAS P=1.81e-57 · Best GWAS P=1.55e-52 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | MED28 | 0.07 | 0.09 | enet | 9 | 0.11 | 7.1e-13 | -5.11 | 5.1 | 2.8e-07 | -0.18 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Subcutaneous | DCAF16 | 0.21 | 0.15 | lasso | 3 | 0.17 | 5.1e-14 | 9.11 | 8.9 | 7.2e-19 | -0.24 | 1.00 | 0.00 | FALSE |
3 | GTEx | Adipose Visceral Omentum | DCAF16 | 0.19 | 0.06 | enet | 10 | 0.11 | 3.9e-06 | 9.11 | 10.2 | 1.2e-24 | -0.35 | 0.28 | 0.49 | FALSE |
4 | GTEx | Artery Aorta | DCAF16 | 0.10 | 0.01 | enet | 6 | 0.02 | 4.7e-02 | -14.27 | 16.0 | 1.8e-57 | -0.81 | 0.05 | 0.80 | TRUE |
5 | GTEx | Artery Tibial | DCAF16 | 0.16 | 0.16 | lasso | 5 | 0.13 | 1.5e-10 | 10.49 | 11.8 | 6.8e-32 | -0.36 | 1.00 | 0.00 | TRUE |
6 | GTEx | Breast Mammary Tissue | DCAF16 | 0.12 | 0.08 | lasso | 4 | 0.10 | 6.4e-06 | 9.12 | 12.1 | 7.6e-34 | -0.52 | 0.15 | 0.63 | FALSE |
7 | GTEx | Breast Mammary Tissue (Male) | DCAF16 | 0.24 | 0.03 | enet | 18 | -0.01 | 4.4e-01 | -13.51 | 13.4 | 6.2e-41 | -0.76 | 0.04 | 0.57 | FALSE |
8 | GTEx | Breast Mammary Tissue (Female) | DCAF16 | 0.16 | 0.13 | lasso | 2 | 0.06 | 7.8e-03 | 9.11 | 9.2 | 3.0e-20 | -0.27 | 0.06 | 0.08 | FALSE |
9 | GTEx | Colon Transverse | MED28 | 0.13 | 0.05 | lasso | 3 | 0.02 | 5.8e-02 | -4.48 | 5.1 | 3.1e-07 | -0.11 | 0.20 | 0.04 | FALSE |
10 | GTEx | Esophagus Mucosa | DCAF16 | 0.10 | 0.02 | lasso | 4 | 0.02 | 8.3e-03 | 9.12 | 9.8 | 1.9e-22 | -0.37 | 0.13 | 0.41 | FALSE |
11 | GTEx | Esophagus Muscularis | DCAF16 | 0.16 | 0.14 | lasso | 3 | 0.14 | 9.3e-09 | 9.11 | 8.9 | 5.2e-19 | -0.27 | 0.99 | 0.00 | FALSE |
12 | GTEx | Nerve Tibial | DCAF16 | 0.16 | 0.14 | lasso | 3 | 0.14 | 2.8e-10 | 9.11 | 10.5 | 1.5e-25 | -0.37 | 0.99 | 0.01 | FALSE |
13 | GTEx | Pituitary | DCAF16 | 0.27 | 0.20 | enet | 15 | 0.19 | 1.3e-05 | 9.11 | 9.2 | 5.1e-20 | -0.38 | 0.07 | 0.35 | FALSE |
14 | GTEx | Skin Not Sun Exposed Suprapubic | DCAF16 | 0.16 | 0.08 | lasso | 5 | 0.12 | 4.4e-07 | 10.12 | 11.1 | 8.6e-29 | -0.35 | 0.64 | 0.04 | TRUE |
15 | GTEx | Skin Sun Exposed Lower leg | DCAF16 | 0.14 | 0.12 | enet | 14 | 0.12 | 5.4e-10 | 9.12 | 10.3 | 9.6e-25 | -0.28 | 1.00 | 0.00 | FALSE |
16 | GTEx | Spleen | DCAF16 | 0.35 | 0.02 | lasso | 5 | 0.11 | 8.5e-04 | 9.11 | 14.2 | 5.2e-46 | -0.66 | 0.06 | 0.53 | FALSE |
17 | GTEx | Stomach | DCAF16 | 0.21 | 0.04 | lasso | 6 | 0.02 | 5.6e-02 | 10.26 | 11.3 | 1.6e-29 | -0.26 | 0.19 | 0.04 | FALSE |
18 | GTEx | Thyroid | DCAF16 | 0.11 | 0.02 | lasso | 5 | 0.03 | 2.3e-03 | 9.11 | 13.4 | 8.6e-41 | -0.54 | 0.17 | 0.70 | FALSE |
19 | ROSMAP | Brain Pre-frontal Cortex | FAM184B | 0.17 | 0.14 | enet | 31 | 0.18 | 5.1e-23 | -5.11 | -7.1 | 1.6e-12 | 0.26 | 1.00 | 0.00 | FALSE |
20 | ROSMAP | Brain Pre-frontal Cortex | MED28 | 0.02 | 0.01 | bslmm | 411 | 0.00 | 1.9e-01 | -4.93 | 6.8 | 1.2e-11 | -0.30 | 0.22 | 0.03 | FALSE |
21 | ROSMAP | Brain Pre-frontal Cortex | DCAF16 | 0.04 | 0.02 | bslmm | 379 | 0.01 | 3.9e-02 | -13.58 | 12.9 | 6.1e-38 | -0.83 | 0.03 | 0.89 | TRUE |
22 | YFS | Blood | DCAF16 | 0.02 | 0.02 | lasso | 1 | 0.01 | 1.1e-04 | 10.49 | 10.5 | 1.0e-25 | -0.25 | 0.84 | 0.04 | FALSE |
23 | The Cancer Genome Atlas | Breast Invasive Carcinoma | NCAPG | 0.03 | 0.04 | enet | 5 | 0.04 | 8.1e-09 | -0.62 | -5.5 | 4.2e-08 | 0.55 | 0.95 | 0.05 | TRUE |
24 | The Cancer Genome Atlas | Colon Adenocarcinoma | NCAPG | 0.08 | 0.04 | blup | 34 | 0.09 | 1.1e-05 | -13.70 | -12.1 | 8.1e-34 | 0.84 | 0.01 | 0.98 | FALSE |
25 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | FAM184B | 0.02 | 0.03 | lasso | 2 | 0.02 | 2.6e-03 | -5.21 | -5.3 | 1.4e-07 | 0.16 | 0.24 | 0.03 | FALSE |
26 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | NCAPG | 0.14 | 0.07 | lasso | 3 | 0.07 | 5.2e-08 | -13.58 | -13.3 | 4.3e-40 | 0.84 | 0.71 | 0.28 | FALSE |
27 | The Cancer Genome Atlas | Brain Lower Grade Glioma | DCAF16 | 0.09 | 0.02 | lasso | 3 | 0.04 | 5.2e-05 | 10.49 | 14.9 | 5.1e-50 | -0.64 | 0.09 | 0.78 | FALSE |
28 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NCAPG | 0.02 | 0.03 | lasso | 1 | 0.02 | 9.0e-04 | -13.70 | -13.7 | 1.1e-42 | 0.88 | 0.03 | 0.57 | FALSE |
29 | The Cancer Genome Atlas | Lung Adenocarcinoma | NCAPG | 0.06 | 0.02 | blup | 34 | 0.04 | 1.0e-05 | -13.70 | -8.8 | 1.6e-18 | 0.68 | 0.04 | 0.73 | TRUE |
30 | The Cancer Genome Atlas | Prostate Adenocarcinoma | DCAF16 | 0.04 | 0.04 | blup | 31 | 0.04 | 2.2e-05 | 9.11 | 13.3 | 2.2e-40 | -0.58 | 0.28 | 0.22 | FALSE |
31 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NCAPG | 0.02 | 0.02 | blup | 34 | 0.02 | 3.4e-03 | -12.47 | -11.5 | 2.1e-30 | 0.76 | 0.01 | 0.77 | FALSE |
32 | The Cancer Genome Atlas | Stomach Adenocarcinoma | LAP3 | 0.07 | 0.03 | blup | 36 | 0.06 | 5.3e-05 | -3.19 | -5.2 | 2.2e-07 | 0.15 | 0.03 | 0.96 | FALSE |
33 | The Cancer Genome Atlas | Thyroid Carcinoma | DCAF16 | 0.07 | 0.04 | blup | 31 | 0.07 | 4.9e-07 | 10.26 | 14.2 | 4.6e-46 | -0.65 | 0.14 | 0.79 | FALSE |