Best TWAS P=7.15e-11 · Best GWAS P=9.74e-11 conditioned to 0.0324
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | PTPN13 | 0.13 | 0.18 | bslmm | 418 | 0.18 | 6.8e-22 | 5.6 | -6.0 | 2.7e-09 | -0.44 | 0.52 | 0.47 | FALSE |
2 | GTEx | Artery Aorta | MAPK10 | 0.15 | 0.17 | enet | 16 | 0.17 | 1.4e-09 | 6.2 | -6.1 | 1.1e-09 | -0.81 | 0.01 | 0.99 | FALSE |
3 | GTEx | Artery Aorta | ARHGAP24 | 0.24 | 0.13 | enet | 8 | 0.14 | 2.2e-08 | -4.1 | -5.2 | 1.5e-07 | -0.06 | 0.69 | 0.31 | FALSE |
4 | GTEx | Artery Aorta | RP13-514E23.2 | 0.26 | 0.09 | lasso | 6 | 0.10 | 2.2e-06 | -5.5 | -5.5 | 4.2e-08 | -0.05 | 0.38 | 0.62 | FALSE |
5 | GTEx | Artery Tibial | ARHGAP24 | 0.26 | 0.19 | enet | 14 | 0.21 | 2.7e-16 | -5.5 | -5.3 | 1.1e-07 | -0.01 | 0.30 | 0.70 | FALSE |
6 | GTEx | Artery Tibial | RP13-514E23.2 | 0.22 | 0.16 | enet | 10 | 0.18 | 1.2e-13 | -5.5 | -5.6 | 2.8e-08 | -0.04 | 0.33 | 0.67 | TRUE |
7 | GTEx | Brain Caudate basal ganglia | PTPN13 | 0.26 | 0.16 | enet | 17 | 0.11 | 4.6e-04 | 5.7 | -5.4 | 7.6e-08 | -0.34 | 0.24 | 0.47 | FALSE |
8 | GTEx | Colon Sigmoid | MAPK10 | 0.25 | 0.11 | lasso | 8 | 0.07 | 1.6e-03 | 6.3 | -6.5 | 7.1e-11 | -0.74 | 0.02 | 0.96 | TRUE |
9 | GTEx | Thyroid | PTPN13 | 0.41 | 0.31 | lasso | 6 | 0.30 | 3.2e-23 | 6.5 | 6.3 | 2.8e-10 | 0.81 | 0.01 | 0.99 | FALSE |
10 | ROSMAP | Brain Pre-frontal Cortex | PTPN13 | 0.09 | 0.03 | blup | 409 | 0.07 | 4.7e-09 | 5.6 | -6.0 | 1.8e-09 | -0.45 | 0.50 | 0.50 | FALSE |