Best TWAS P=3.08e-19 · Best GWAS P=5.64e-19 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | CENPP | 0.43 | 0.52 | bslmm | 525 | 0.51 | 2.3e-72 | -5.3 | -5.4 | 7.2e-08 | 0.62 | 1.00 | 0.00 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | OGN | 0.04 | 0.04 | lasso | 4 | 0.04 | 2.3e-05 | -5.4 | -6.8 | 7.4e-12 | 0.75 | 0.09 | 0.90 | FALSE |
3 | GTEx | Adipose Subcutaneous | ANKRD19P | 0.06 | 0.03 | enet | 16 | 0.04 | 2.2e-04 | -2.7 | 5.3 | 1.2e-07 | -0.71 | 0.15 | 0.83 | FALSE |
4 | GTEx | Adipose Visceral Omentum | CENPP | 0.28 | 0.29 | enet | 14 | 0.30 | 5.1e-16 | -5.0 | -5.2 | 2.4e-07 | 0.60 | 1.00 | 0.00 | FALSE |
5 | GTEx | Adrenal Gland | CENPP | 0.45 | 0.32 | enet | 21 | 0.31 | 7.5e-12 | -5.3 | -5.4 | 5.9e-08 | 0.59 | 1.00 | 0.00 | FALSE |
6 | GTEx | Artery Aorta | NOL8 | 0.09 | 0.04 | lasso | 9 | 0.02 | 2.3e-02 | -8.3 | 7.8 | 5.2e-15 | -0.84 | 0.11 | 0.83 | FALSE |
7 | GTEx | Artery Tibial | NOL8 | 0.04 | 0.03 | lasso | 4 | 0.03 | 3.5e-03 | -8.8 | 8.6 | 9.1e-18 | -0.94 | 0.08 | 0.84 | FALSE |
8 | GTEx | Brain Caudate basal ganglia | CENPP | 0.37 | 0.30 | enet | 10 | 0.31 | 1.3e-09 | -5.0 | -5.1 | 3.0e-07 | 0.59 | 0.94 | 0.03 | FALSE |
9 | GTEx | Brain Cerebellar Hemisphere | IPPK | 0.17 | 0.22 | lasso | 13 | 0.16 | 6.8e-05 | -8.7 | -8.4 | 6.4e-17 | 0.99 | 0.05 | 0.93 | FALSE |
10 | GTEx | Brain Cerebellum | IPPK | 0.12 | 0.01 | enet | 17 | 0.01 | 1.6e-01 | -7.1 | -5.3 | 1.1e-07 | 0.81 | 0.09 | 0.43 | FALSE |
11 | GTEx | Brain Cerebellum | CENPP | 0.41 | 0.34 | lasso | 6 | 0.32 | 2.5e-10 | -5.0 | -5.2 | 1.6e-07 | 0.62 | 0.98 | 0.01 | FALSE |
12 | GTEx | Brain Cortex | CENPP | 0.24 | 0.29 | lasso | 9 | 0.28 | 2.1e-08 | -5.0 | -5.2 | 2.2e-07 | 0.62 | 0.45 | 0.53 | FALSE |
13 | GTEx | Brain Frontal Cortex BA9 | CENPP | 0.47 | 0.30 | lasso | 9 | 0.29 | 1.8e-08 | -5.0 | -5.4 | 7.7e-08 | 0.59 | 0.75 | 0.12 | FALSE |
14 | GTEx | Brain Hypothalamus | CENPP | 0.35 | 0.22 | lasso | 6 | 0.14 | 4.0e-04 | -5.0 | -5.3 | 9.4e-08 | 0.62 | 0.31 | 0.33 | FALSE |
15 | GTEx | Cells Transformed fibroblasts | OGN | 0.03 | 0.03 | lasso | 2 | 0.01 | 3.2e-02 | -8.5 | -8.5 | 2.4e-17 | 0.90 | 0.10 | 0.84 | FALSE |
16 | GTEx | Cells Transformed fibroblasts | PHF2 | 0.07 | 0.06 | lasso | 5 | 0.04 | 5.5e-04 | -5.9 | -5.8 | 8.4e-09 | 0.10 | 0.09 | 0.87 | FALSE |
17 | GTEx | Colon Sigmoid | CENPP | 0.55 | 0.40 | lasso | 5 | 0.39 | 8.8e-15 | -5.3 | -5.5 | 4.4e-08 | 0.63 | 1.00 | 0.00 | FALSE |
18 | GTEx | Colon Transverse | CENPP | 0.25 | 0.26 | lasso | 2 | 0.24 | 1.5e-11 | -5.3 | -5.3 | 9.4e-08 | 0.62 | 1.00 | 0.00 | FALSE |
19 | GTEx | Esophagus Gastroesophageal Junction | CENPP | 0.22 | 0.19 | lasso | 8 | 0.15 | 6.2e-06 | -5.3 | -5.9 | 3.2e-09 | 0.67 | 0.75 | 0.22 | FALSE |
20 | GTEx | Esophagus Muscularis | OGN | 0.07 | 0.03 | enet | 13 | 0.02 | 2.0e-02 | -2.1 | -5.4 | 7.7e-08 | 0.57 | 0.14 | 0.71 | FALSE |
21 | GTEx | Esophagus Muscularis | CENPP | 0.40 | 0.40 | lasso | 5 | 0.41 | 2.7e-26 | -5.3 | -5.2 | 2.2e-07 | 0.61 | 1.00 | 0.00 | FALSE |
22 | GTEx | Heart Atrial Appendage | CENPP | 0.41 | 0.40 | lasso | 7 | 0.40 | 1.7e-19 | -5.0 | -5.4 | 8.1e-08 | 0.58 | 1.00 | 0.00 | FALSE |
23 | GTEx | Liver | OGN | 0.13 | 0.03 | lasso | 4 | 0.04 | 3.5e-02 | -3.9 | -5.8 | 8.5e-09 | 0.60 | 0.09 | 0.52 | FALSE |
24 | GTEx | Liver | ECM2 | 0.16 | 0.18 | enet | 8 | 0.18 | 7.4e-06 | -8.4 | 8.3 | 1.3e-16 | -0.91 | 0.09 | 0.90 | FALSE |
25 | GTEx | Liver | CENPP | 0.44 | 0.21 | lasso | 9 | 0.21 | 2.0e-06 | -5.5 | -5.6 | 1.8e-08 | 0.69 | 0.78 | 0.04 | FALSE |
26 | GTEx | Lung | CENPP | 0.30 | 0.24 | lasso | 8 | 0.27 | 1.1e-20 | -5.3 | -5.7 | 9.3e-09 | 0.56 | 1.00 | 0.00 | FALSE |
27 | GTEx | Lung | NOL8 | 0.08 | 0.03 | enet | 15 | 0.04 | 2.3e-04 | -7.1 | 6.6 | 4.4e-11 | -0.82 | 0.11 | 0.88 | FALSE |
28 | GTEx | Muscle Skeletal | OGN | 0.03 | 0.02 | enet | 9 | 0.03 | 3.0e-04 | -8.2 | -8.1 | 6.8e-16 | 0.92 | 0.07 | 0.89 | FALSE |
29 | GTEx | Muscle Skeletal | CENPP | 0.30 | 0.29 | lasso | 6 | 0.30 | 1.0e-29 | -5.3 | -5.2 | 2.4e-07 | 0.61 | 1.00 | 0.00 | FALSE |
30 | GTEx | Nerve Tibial | OGN | 0.08 | 0.14 | lasso | 9 | 0.12 | 6.3e-09 | -8.9 | -9.0 | 3.5e-19 | 0.99 | 0.04 | 0.96 | FALSE |
31 | GTEx | Nerve Tibial | CENPP | 0.47 | 0.36 | enet | 45 | 0.39 | 7.6e-29 | -5.0 | -5.8 | 6.4e-09 | 0.64 | 1.00 | 0.00 | FALSE |
32 | GTEx | Nerve Tibial | NOL8 | 0.10 | 0.02 | enet | 7 | 0.03 | 4.7e-03 | -8.0 | 8.2 | 1.8e-16 | -0.85 | 0.26 | 0.65 | FALSE |
33 | GTEx | Pituitary | IPPK | 0.16 | 0.07 | lasso | 4 | 0.07 | 8.5e-03 | -7.5 | -8.6 | 1.0e-17 | 0.90 | 0.07 | 0.70 | FALSE |
34 | GTEx | Skin Sun Exposed Lower leg | CENPP | 0.20 | 0.06 | lasso | 9 | 0.14 | 2.9e-11 | 4.5 | -6.4 | 1.9e-10 | 0.51 | 0.92 | 0.08 | FALSE |
35 | GTEx | Small Intestine Terminal Ileum | CENPP | 0.29 | 0.11 | enet | 11 | 0.10 | 2.9e-03 | -7.8 | -7.5 | 6.6e-14 | 0.74 | 0.17 | 0.46 | FALSE |
36 | GTEx | Spleen | NOL8 | 0.29 | 0.24 | lasso | 2 | 0.19 | 1.1e-05 | -7.3 | 7.3 | 3.2e-13 | -0.78 | 0.12 | 0.83 | FALSE |
37 | GTEx | Stomach | CENPP | 0.28 | 0.24 | lasso | 6 | 0.22 | 5.0e-11 | -5.3 | -5.3 | 1.5e-07 | 0.58 | 0.99 | 0.01 | FALSE |
38 | GTEx | Testis | NOL8 | 0.19 | 0.24 | lasso | 11 | 0.23 | 1.3e-10 | -8.8 | 8.8 | 9.5e-19 | -0.95 | 0.06 | 0.94 | FALSE |
39 | GTEx | Thyroid | OGN | 0.09 | 0.08 | lasso | 4 | 0.05 | 9.9e-05 | -5.8 | -6.4 | 1.7e-10 | 0.63 | 0.30 | 0.69 | FALSE |
40 | GTEx | Whole Blood | NOL8 | 0.05 | 0.01 | enet | 21 | 0.01 | 3.5e-02 | -8.5 | 7.4 | 1.4e-13 | -0.67 | 0.08 | 0.74 | FALSE |
41 | METSIM | Adipose | NOL8 | 0.06 | 0.03 | blup | 418 | 0.04 | 4.1e-07 | -5.5 | 7.1 | 1.5e-12 | -0.77 | 0.09 | 0.91 | FALSE |
42 | NTR | Blood | ASPN | 0.03 | 0.04 | lasso | 8 | 0.03 | 3.4e-11 | -5.3 | -5.7 | 9.7e-09 | 0.63 | 0.99 | 0.01 | FALSE |
43 | NTR | Blood | CENPP | 0.02 | 0.02 | lasso | 4 | 0.02 | 2.0e-07 | -5.3 | -7.4 | 1.4e-13 | 0.79 | 0.44 | 0.56 | FALSE |
44 | NTR | Blood | IPPK | 0.02 | 0.01 | bslmm | 416 | 0.01 | 9.9e-06 | -8.5 | -8.1 | 8.2e-16 | 0.83 | 0.08 | 0.92 | FALSE |
45 | NTR | Blood | OGN | 0.10 | 0.11 | lasso | 3 | 0.11 | 5.1e-33 | -5.3 | -5.4 | 8.4e-08 | 0.62 | 1.00 | 0.00 | FALSE |
46 | NTR | Blood | OMD | 0.08 | 0.06 | lasso | 19 | 0.05 | 4.5e-17 | -5.0 | -5.2 | 2.0e-07 | 0.59 | 1.00 | 0.00 | FALSE |
47 | YFS | Blood | NOL8 | 0.06 | 0.09 | lasso | 17 | 0.10 | 1.5e-29 | -8.5 | 8.1 | 8.2e-16 | -0.91 | 0.05 | 0.95 | FALSE |
48 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | CENPP | 0.08 | 0.00 | lasso | 6 | 0.00 | 1.3e-01 | -5.0 | -5.5 | 3.3e-08 | 0.44 | 0.06 | 0.06 | FALSE |
49 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CENPP | 0.07 | 0.03 | lasso | 5 | 0.06 | 2.1e-11 | 4.5 | -7.5 | 8.4e-14 | 0.61 | 0.83 | 0.17 | FALSE |
50 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ECM2 | 0.03 | 0.02 | lasso | 5 | 0.02 | 3.9e-05 | 3.6 | -5.8 | 5.1e-09 | 0.87 | 0.02 | 0.96 | FALSE |
51 | The Cancer Genome Atlas | Breast Invasive Carcinoma | OGN | 0.02 | 0.02 | lasso | 1 | 0.02 | 2.7e-04 | -8.9 | -8.9 | 6.8e-19 | 1.00 | 0.01 | 0.98 | FALSE |
52 | The Cancer Genome Atlas | Colon Adenocarcinoma | CENPP | 0.21 | 0.04 | enet | 16 | 0.10 | 1.9e-06 | 4.5 | -6.3 | 3.9e-10 | 0.51 | 0.26 | 0.23 | FALSE |
53 | The Cancer Genome Atlas | Esophageal Carcinoma | PHF2 | 0.29 | 0.14 | blup | 103 | 0.16 | 1.0e-05 | -6.3 | -5.9 | 4.8e-09 | 0.07 | 0.00 | 0.99 | FALSE |
54 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | CENPP | 0.06 | 0.02 | blup | 160 | 0.04 | 6.3e-05 | 4.5 | -7.1 | 1.4e-12 | 0.61 | 0.46 | 0.19 | FALSE |
55 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | OGN | 0.02 | 0.01 | blup | 51 | 0.01 | 3.4e-02 | -7.4 | -8.5 | 1.7e-17 | 0.92 | 0.03 | 0.60 | FALSE |
56 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CENPP | 0.23 | 0.16 | lasso | 8 | 0.16 | 1.3e-17 | -5.3 | -5.8 | 7.8e-09 | 0.61 | 1.00 | 0.00 | FALSE |
57 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | CENPP | 0.23 | 0.16 | lasso | 6 | 0.16 | 1.9e-09 | -5.3 | -5.3 | 1.0e-07 | 0.62 | 0.99 | 0.00 | FALSE |
58 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CENPP | 0.33 | 0.28 | lasso | 8 | 0.28 | 1.6e-31 | -5.3 | -5.3 | 9.1e-08 | 0.63 | 1.00 | 0.00 | FALSE |
59 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | OGN | 0.07 | 0.08 | lasso | 1 | 0.06 | 8.0e-04 | -8.4 | -8.4 | 4.2e-17 | 0.85 | 0.07 | 0.72 | FALSE |
60 | The Cancer Genome Atlas | Lung Adenocarcinoma | CENPP | 0.14 | 0.08 | lasso | 5 | 0.07 | 2.9e-08 | -5.3 | -5.7 | 1.4e-08 | 0.58 | 0.99 | 0.00 | FALSE |
61 | The Cancer Genome Atlas | Lung Adenocarcinoma | OGN | 0.07 | 0.12 | blup | 52 | 0.14 | 1.2e-15 | -8.4 | -8.8 | 9.6e-19 | 0.93 | 0.11 | 0.89 | FALSE |
62 | The Cancer Genome Atlas | Lung Adenocarcinoma | OMD | 0.04 | 0.06 | lasso | 3 | 0.05 | 1.1e-06 | -8.4 | -8.4 | 4.9e-17 | 0.85 | 0.17 | 0.82 | FALSE |
63 | The Cancer Genome Atlas | Lung Adenocarcinoma | PHF2 | 0.07 | 0.03 | blup | 104 | 0.05 | 1.9e-06 | -6.3 | -6.1 | 1.1e-09 | 0.02 | 0.01 | 0.99 | TRUE |
64 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | CENPP | 0.06 | 0.04 | blup | 160 | 0.05 | 5.6e-06 | 4.5 | -7.5 | 7.3e-14 | 0.62 | 0.61 | 0.25 | FALSE |
65 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | OGN | 0.02 | 0.02 | blup | 52 | 0.02 | 2.8e-03 | 7.2 | -8.9 | 5.4e-19 | 0.98 | 0.02 | 0.94 | FALSE |
66 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | CENPP | 0.10 | 0.01 | blup | 161 | 0.04 | 6.3e-04 | -1.4 | -6.4 | 2.1e-10 | 0.50 | 0.24 | 0.17 | FALSE |
67 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | OGN | 0.05 | 0.02 | blup | 52 | 0.03 | 2.4e-02 | 7.2 | -8.9 | 6.6e-19 | 0.94 | 0.02 | 0.71 | FALSE |
68 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | CENPP | 0.14 | 0.04 | lasso | 12 | 0.03 | 1.9e-02 | -5.3 | -5.4 | 7.4e-08 | 0.63 | 0.14 | 0.21 | FALSE |
69 | The Cancer Genome Atlas | Prostate Adenocarcinoma | CENPP | 0.29 | 0.19 | lasso | 13 | 0.19 | 4.5e-19 | -5.1 | -6.2 | 5.5e-10 | 0.71 | 1.00 | 0.00 | FALSE |
70 | The Cancer Genome Atlas | Prostate Adenocarcinoma | OGN | 0.16 | 0.01 | enet | 16 | 0.05 | 5.8e-06 | -8.7 | -5.2 | 1.7e-07 | 0.62 | 0.02 | 0.80 | FALSE |
71 | The Cancer Genome Atlas | Stomach Adenocarcinoma | CENPP | 0.14 | 0.03 | blup | 160 | 0.04 | 6.7e-04 | 4.5 | -5.2 | 2.4e-07 | 0.37 | 0.42 | 0.06 | FALSE |
72 | The Cancer Genome Atlas | Thyroid Carcinoma | CENPP | 0.22 | 0.15 | blup | 158 | 0.19 | 3.3e-18 | -4.6 | -6.2 | 7.5e-10 | 0.65 | 1.00 | 0.00 | FALSE |
73 | The Cancer Genome Atlas | Thyroid Carcinoma | IPPK | 0.03 | 0.04 | blup | 50 | 0.04 | 6.7e-05 | 5.5 | -6.6 | 3.8e-11 | 0.47 | 0.69 | 0.04 | FALSE |
74 | The Cancer Genome Atlas | Thyroid Carcinoma | NOL8 | 0.02 | 0.01 | blup | 38 | 0.02 | 7.3e-03 | -7.4 | 9.0 | 3.1e-19 | -0.96 | 0.02 | 0.76 | TRUE |