TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Impedance of whole body
:
←
→
chr4:122,494,838-124,496,928
Best TWAS P=5.82e-08 · Best GWAS P=1.57e-07 conditioned to 1.1e-05
122.5M
123M
123.5M
124M
124.5M
0
2
4
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
CommonMind
Brain Pre-frontal Cortex
BBS12
0.06
0.06
enet
9
0.06
8.7e-08
-5.0
-5.4
5.8e-08
0.14
0.03
0.96
TRUE
3
The Cancer Genome Atlas
Head and Neck Squamous Cell Carcinoma
CCNA2
0.03
0.01
blup
34
0.02
1.5e-03
4.3
-5.1
2.7e-07
0.02
0.00
0.63
TRUE
2
GTEx
Artery Tibial
FGF2
0.18
0.05
lasso
3
0.02
1.3e-02
-5.0
-5.2
2.3e-07
0.36
0.01
0.80
FALSE