TWAS
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Usage
Models
Genes
Traits
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Traits
:
Impedance of whole body
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chr5:101,392,473-103,061,825
Best TWAS P=7.9e-09 · Best GWAS P=4.46e-09 conditioned to 0.0198
101.4M
101.6M
101.8M
102M
102.2M
102.4M
102.6M
102.8M
103M
0
2
4
6
8
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Thyroid
PAM
0.07
0.08
lasso
4
0.07
5.5e-06
-5.8
5.8
7.9e-09
-0.75
0.01
0.98
TRUE
4
YFS
Blood
PAM
0.64
0.68
enet
68
0.72
0.0e+00
-5.1
-5.6
2.5e-08
0.91
0.40
0.60
FALSE
2
GTEx
Whole Blood
PAM
0.20
0.28
lasso
9
0.27
1.0e-24
-5.5
-5.5
4.5e-08
0.94
0.06
0.94
FALSE
3
METSIM
Adipose
PAM
0.04
0.02
lasso
2
0.02
2.9e-04
-5.5
-5.2
2.6e-07
0.89
0.03
0.95
FALSE