TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Impedance of whole body
:
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chr6:100,257,579-102,026,932
Best TWAS P=3.13e-10 · Best GWAS P=8.53e-11 conditioned to 0.0874
100.2M
100.4M
100.6M
100.8M
101M
101.2M
101.4M
101.6M
101.8M
102M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Thyroid Carcinoma
ASCC3
0.06
0.05
lasso
1
0.04
0.0002
-6.3
6.3
3.1e-10
-0.94
0.04
0.94
TRUE
1
GTEx
Prostate
ASCC3
0.32
0.03
lasso
6
0.06
0.0112
-2.4
-5.9
3.4e-09
0.52
0.08
0.20
FALSE
3
The Cancer Genome Atlas
Esophageal Carcinoma
ASCC3
0.11
0.07
blup
131
0.07
0.0024
4.6
5.8
5.9e-09
-0.90
0.08
0.71
FALSE
2
ROSMAP
Brain Pre-frontal Cortex
RP3-467N11.1
0.02
0.00
blup
287
0.01
0.0230
4.9
-5.5
4.3e-08
0.83
0.07
0.44
FALSE