Best TWAS P=1.95e-12 · Best GWAS P=7.55e-13 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Aorta | MADD | 0.09 | 0.03 | enet | 22 | 0.04 | 1.9e-03 | 6.6 | -5.8 | 7.6e-09 | -0.64 | 0.05 | 0.62 | TRUE |
2 | GTEx | Artery Tibial | MADD | 0.09 | 0.00 | enet | 13 | 0.02 | 1.1e-02 | 3.3 | -5.3 | 1.5e-07 | -0.62 | 0.18 | 0.62 | FALSE |
3 | GTEx | Brain Cerebellar Hemisphere | RP11-750H9.5 | 0.17 | 0.25 | lasso | 6 | 0.21 | 3.5e-06 | 5.6 | -5.6 | 2.1e-08 | -0.80 | 0.30 | 0.34 | FALSE |
4 | GTEx | Cells Transformed fibroblasts | MADD | 0.19 | 0.00 | enet | 17 | 0.09 | 3.3e-07 | 3.3 | -5.6 | 1.9e-08 | -0.27 | 0.50 | 0.10 | FALSE |
5 | GTEx | Esophagus Mucosa | MADD | 0.27 | 0.04 | enet | 18 | 0.12 | 4.1e-08 | 3.5 | -6.3 | 2.6e-10 | -0.54 | 0.18 | 0.35 | TRUE |
6 | GTEx | Esophagus Muscularis | MADD | 0.13 | 0.07 | enet | 8 | 0.11 | 2.0e-07 | 3.0 | -5.6 | 1.7e-08 | -0.65 | 0.44 | 0.41 | TRUE |
7 | GTEx | Liver | C1QTNF4 | 0.25 | 0.14 | enet | 16 | 0.20 | 2.3e-06 | -4.1 | 6.5 | 6.8e-11 | 0.82 | 0.06 | 0.90 | FALSE |
8 | GTEx | Nerve Tibial | NR1H3 | 0.10 | 0.00 | enet | 24 | 0.08 | 4.7e-06 | 4.4 | 7.0 | 1.9e-12 | 0.40 | 0.06 | 0.33 | TRUE |
9 | GTEx | Nerve Tibial | CELF1 | 0.08 | 0.02 | enet | 15 | 0.06 | 4.3e-05 | 6.6 | -6.1 | 1.2e-09 | -0.79 | 0.02 | 0.90 | FALSE |
10 | GTEx | Pituitary | MADD | 0.42 | 0.32 | lasso | 6 | 0.39 | 8.9e-11 | 5.6 | -5.7 | 1.5e-08 | -0.74 | 0.30 | 0.55 | FALSE |
11 | GTEx | Thyroid | MADD | 0.11 | 0.00 | enet | 13 | 0.01 | 6.1e-02 | -3.7 | -6.0 | 2.1e-09 | -0.43 | 0.06 | 0.16 | TRUE |
12 | NTR | Blood | MADD | 0.01 | 0.01 | enet | 8 | 0.01 | 4.7e-03 | -4.1 | -6.4 | 1.4e-10 | -0.44 | 0.14 | 0.17 | FALSE |
13 | ROSMAP | Brain Pre-frontal Cortex | FNBP4 | 0.04 | 0.04 | lasso | 3 | 0.04 | 8.2e-06 | 3.9 | -5.2 | 2.3e-07 | -0.86 | 0.32 | 0.68 | FALSE |
14 | ROSMAP | Brain Pre-frontal Cortex | ATG13 | 0.05 | 0.02 | bslmm | 266 | 0.03 | 1.3e-04 | -3.6 | 5.3 | 1.0e-07 | 0.35 | 0.07 | 0.84 | TRUE |
15 | YFS | Blood | DDB2 | 0.02 | 0.00 | bslmm | 306 | 0.01 | 1.9e-04 | 1.6 | -5.3 | 1.2e-07 | -0.10 | 0.25 | 0.02 | FALSE |
16 | YFS | Blood | FNBP4 | 0.02 | 0.01 | bslmm | 301 | 0.01 | 8.9e-05 | 7.0 | -6.1 | 1.1e-09 | -0.74 | 0.01 | 0.98 | FALSE |
17 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ACP2 | 0.02 | 0.01 | blup | 44 | 0.02 | 2.7e-04 | 3.3 | -5.2 | 2.1e-07 | -0.13 | 0.03 | 0.24 | FALSE |
18 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MADD | 0.11 | 0.03 | enet | 14 | 0.06 | 1.4e-11 | 3.0 | -6.1 | 1.1e-09 | -0.49 | 0.36 | 0.58 | TRUE |
19 | The Cancer Genome Atlas | Lung Adenocarcinoma | C1QTNF4 | 0.03 | 0.02 | blup | 15 | 0.02 | 1.3e-03 | -4.1 | 5.1 | 2.7e-07 | 0.62 | 0.10 | 0.21 | FALSE |
20 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | MADD | 0.16 | 0.05 | blup | 64 | 0.08 | 2.2e-09 | -4.0 | -5.8 | 6.3e-09 | -0.30 | 0.74 | 0.19 | TRUE |
21 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MADD | 0.15 | 0.04 | enet | 10 | 0.06 | 4.5e-07 | 3.0 | -5.8 | 6.9e-09 | -0.40 | 0.18 | 0.10 | TRUE |
22 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | MADD | 0.21 | 0.04 | blup | 64 | 0.07 | 1.3e-03 | 1.6 | -5.2 | 2.1e-07 | -0.15 | 0.06 | 0.10 | TRUE |
23 | The Cancer Genome Atlas | Thyroid Carcinoma | C1QTNF4 | 0.04 | 0.01 | blup | 15 | 0.03 | 7.9e-04 | -4.1 | 5.7 | 1.1e-08 | 0.55 | 0.01 | 0.75 | FALSE |