Best TWAS P=2.77e-20 · Best GWAS P=6.41e-18 conditioned to 0.306
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | BMP8A | 0.05 | 0.03 | lasso | 3 | 0.02 | 8.8e-04 | -7.24 | -7.5 | 5.8e-14 | 0.76 | 0.03 | 0.94 | FALSE |
2 | GTEx | Adipose Subcutaneous | PABPC4 | 0.15 | 0.04 | lasso | 8 | 0.04 | 3.3e-04 | -2.82 | 6.3 | 3.9e-10 | -0.84 | 0.02 | 0.98 | FALSE |
3 | GTEx | Adipose Subcutaneous | RP11-69E11.4 | 0.14 | 0.08 | enet | 22 | 0.10 | 1.4e-08 | -7.23 | -6.4 | 1.8e-10 | 0.64 | 0.98 | 0.02 | FALSE |
4 | GTEx | Adipose Subcutaneous | BMP8A | 0.06 | 0.05 | lasso | 1 | 0.04 | 3.5e-04 | -7.29 | -7.3 | 3.0e-13 | 0.50 | 0.14 | 0.26 | FALSE |
5 | GTEx | Adipose Visceral Omentum | RP11-69E11.4 | 0.10 | 0.07 | lasso | 2 | 0.07 | 1.3e-04 | -6.95 | -6.1 | 1.3e-09 | 0.51 | 0.24 | 0.70 | FALSE |
6 | GTEx | Adrenal Gland | PABPC4 | 0.20 | 0.09 | lasso | 8 | 0.06 | 3.0e-03 | -7.23 | 8.9 | 7.4e-19 | -0.81 | 0.03 | 0.90 | FALSE |
7 | GTEx | Adrenal Gland | RP11-69E11.4 | 0.11 | 0.05 | lasso | 3 | 0.00 | 2.4e-01 | -7.29 | -8.6 | 9.2e-18 | 0.57 | 0.04 | 0.63 | FALSE |
8 | GTEx | Adrenal Gland | PPIEL | 0.29 | 0.01 | lasso | 3 | 0.00 | 2.9e-01 | 4.80 | -7.6 | 3.7e-14 | 0.22 | 0.04 | 0.11 | FALSE |
9 | GTEx | Artery Aorta | RP11-69E11.4 | 0.13 | 0.10 | enet | 14 | 0.14 | 2.5e-08 | -7.24 | -5.8 | 8.4e-09 | 0.69 | 0.53 | 0.46 | FALSE |
10 | GTEx | Artery Coronary | RP11-69E11.4 | 0.63 | -0.01 | lasso | 9 | 0.10 | 2.2e-04 | -7.33 | -6.4 | 1.3e-10 | 0.58 | 0.12 | 0.20 | FALSE |
11 | GTEx | Artery Tibial | PABPC4 | 0.10 | 0.10 | lasso | 4 | 0.10 | 3.4e-08 | -7.23 | 6.9 | 6.3e-12 | -0.76 | 0.51 | 0.49 | FALSE |
12 | GTEx | Artery Tibial | RP11-69E11.4 | 0.15 | 0.16 | lasso | 6 | 0.16 | 8.3e-13 | -6.95 | -6.2 | 6.0e-10 | 0.59 | 1.00 | 0.00 | FALSE |
13 | GTEx | Brain Cerebellar Hemisphere | RP11-69E11.4 | 0.22 | 0.08 | enet | 16 | 0.08 | 4.5e-03 | -6.95 | -6.0 | 2.1e-09 | 0.67 | 0.16 | 0.61 | FALSE |
14 | GTEx | Brain Frontal Cortex BA9 | RP11-69E11.4 | 0.23 | 0.10 | lasso | 6 | 0.11 | 7.2e-04 | -7.33 | -7.3 | 3.0e-13 | 0.51 | 0.12 | 0.21 | FALSE |
15 | GTEx | Breast Mammary Tissue | PABPC4 | 0.13 | 0.02 | enet | 14 | 0.04 | 3.4e-03 | -7.24 | 6.6 | 3.8e-11 | -0.75 | 0.05 | 0.88 | FALSE |
16 | GTEx | Breast Mammary Tissue | RP11-69E11.4 | 0.15 | 0.05 | enet | 32 | 0.05 | 8.8e-04 | -3.42 | -5.6 | 2.3e-08 | 0.62 | 0.29 | 0.66 | FALSE |
17 | GTEx | Breast Mammary Tissue (Female) | PABPC4 | 0.10 | 0.00 | enet | 9 | 0.01 | 1.5e-01 | -8.54 | 8.1 | 5.5e-16 | -0.87 | 0.03 | 0.48 | FALSE |
18 | GTEx | Cells Transformed fibroblasts | PABPC4 | 0.07 | 0.09 | lasso | 1 | 0.06 | 2.7e-05 | -7.23 | 7.2 | 5.0e-13 | -0.72 | 0.07 | 0.91 | FALSE |
19 | GTEx | Cells Transformed fibroblasts | RP11-69E11.4 | 0.15 | 0.08 | enet | 17 | 0.11 | 9.9e-09 | -2.75 | -5.5 | 3.3e-08 | 0.54 | 0.95 | 0.05 | FALSE |
20 | GTEx | Colon Transverse | RP11-69E11.4 | 0.23 | 0.12 | lasso | 4 | 0.15 | 1.8e-07 | -7.24 | -6.3 | 3.9e-10 | 0.72 | 0.13 | 0.87 | FALSE |
21 | GTEx | Esophagus Mucosa | PABPC4 | 0.06 | 0.06 | lasso | 3 | 0.08 | 7.3e-06 | -7.24 | 7.1 | 1.3e-12 | -0.78 | 0.16 | 0.81 | FALSE |
22 | GTEx | Esophagus Mucosa | RP11-69E11.4 | 0.18 | 0.06 | lasso | 9 | 0.07 | 2.2e-05 | -6.95 | -7.2 | 6.6e-13 | 0.68 | 0.58 | 0.41 | FALSE |
23 | GTEx | Esophagus Mucosa | BMP8A | 0.08 | 0.02 | lasso | 2 | 0.01 | 1.4e-01 | 3.16 | -7.1 | 1.2e-12 | 0.75 | 0.03 | 0.94 | FALSE |
24 | GTEx | Esophagus Mucosa | PPIEL | 0.11 | 0.02 | lasso | 3 | 0.02 | 9.4e-03 | -6.88 | -7.0 | 1.8e-12 | 0.79 | 0.07 | 0.78 | FALSE |
25 | GTEx | Esophagus Muscularis | BMP8A | 0.08 | 0.05 | enet | 10 | 0.05 | 3.5e-04 | -2.99 | -5.4 | 6.6e-08 | 0.73 | 0.13 | 0.83 | FALSE |
26 | GTEx | Heart Atrial Appendage | RP11-69E11.4 | 0.20 | 0.16 | lasso | 5 | 0.15 | 3.1e-07 | -7.33 | -5.2 | 2.6e-07 | 0.50 | 0.94 | 0.02 | FALSE |
27 | GTEx | Heart Left Ventricle | RP11-69E11.4 | 0.10 | 0.10 | lasso | 4 | 0.08 | 3.8e-05 | -6.95 | -6.1 | 9.6e-10 | 0.53 | 0.41 | 0.37 | FALSE |
28 | GTEx | Lung | PABPC4 | 0.05 | 0.03 | lasso | 3 | 0.02 | 1.3e-02 | -7.23 | 6.7 | 2.8e-11 | -0.69 | 0.20 | 0.53 | FALSE |
29 | GTEx | Lung | RP11-69E11.4 | 0.26 | 0.09 | lasso | 9 | 0.20 | 3.8e-15 | 3.16 | -7.2 | 9.0e-13 | 0.52 | 0.86 | 0.14 | FALSE |
30 | GTEx | Nerve Tibial | PABPC4 | 0.17 | 0.08 | enet | 12 | 0.05 | 2.7e-04 | -7.23 | 6.4 | 1.3e-10 | -0.75 | 0.14 | 0.85 | FALSE |
31 | GTEx | Nerve Tibial | RP11-69E11.4 | 0.18 | 0.08 | lasso | 5 | 0.18 | 1.3e-12 | -6.57 | -6.4 | 1.2e-10 | 0.70 | 0.27 | 0.73 | FALSE |
32 | GTEx | Nerve Tibial | RP11-69E11.8 | 0.05 | 0.00 | lasso | 3 | 0.01 | 6.9e-02 | -7.23 | 7.5 | 5.0e-14 | -0.78 | 0.04 | 0.84 | FALSE |
33 | GTEx | Ovary | RP11-69E11.4 | 0.25 | 0.05 | enet | 11 | 0.03 | 6.7e-02 | -7.40 | -8.4 | 4.4e-17 | 0.68 | 0.05 | 0.38 | TRUE |
34 | GTEx | Pancreas | RP11-69E11.4 | 0.19 | -0.01 | enet | 16 | 0.01 | 1.3e-01 | 1.76 | -5.8 | 7.4e-09 | 0.55 | 0.06 | 0.42 | FALSE |
35 | GTEx | Skin Not Sun Exposed Suprapubic | PABPC4 | 0.12 | 0.10 | lasso | 3 | 0.05 | 1.0e-03 | -7.24 | 7.0 | 1.9e-12 | -0.75 | 0.20 | 0.59 | FALSE |
36 | GTEx | Skin Sun Exposed Lower leg | PABPC4 | 0.11 | 0.09 | lasso | 7 | 0.08 | 2.7e-07 | -7.24 | 6.8 | 1.1e-11 | -0.76 | 0.15 | 0.85 | FALSE |
37 | GTEx | Skin Sun Exposed Lower leg | RP11-69E11.4 | 0.13 | 0.12 | lasso | 6 | 0.15 | 1.3e-12 | -7.00 | -7.7 | 1.5e-14 | 0.76 | 0.93 | 0.07 | FALSE |
38 | GTEx | Spleen | RP11-69E11.4 | 0.25 | 0.12 | lasso | 4 | 0.15 | 9.3e-05 | -6.95 | -7.6 | 2.2e-14 | 0.74 | 0.13 | 0.72 | FALSE |
39 | GTEx | Spleen | BMP8A | 0.16 | 0.08 | lasso | 3 | 0.05 | 1.6e-02 | -7.00 | -6.6 | 3.6e-11 | 0.78 | 0.06 | 0.38 | FALSE |
40 | GTEx | Stomach | RP11-69E11.4 | 0.31 | 0.20 | lasso | 4 | 0.20 | 4.0e-10 | -6.95 | -7.7 | 1.6e-14 | 0.58 | 0.73 | 0.26 | FALSE |
41 | GTEx | Testis | RP11-69E11.4 | 0.40 | 0.02 | enet | 52 | 0.14 | 1.0e-06 | 1.76 | -5.2 | 2.4e-07 | 0.43 | 0.10 | 0.63 | FALSE |
42 | GTEx | Thyroid | PABPC4 | 0.08 | 0.03 | lasso | 6 | 0.05 | 1.3e-04 | -8.38 | 6.4 | 1.4e-10 | -0.82 | 0.03 | 0.96 | FALSE |
43 | GTEx | Thyroid | RP11-69E11.4 | 0.17 | 0.04 | lasso | 9 | 0.06 | 4.4e-05 | -6.95 | -6.4 | 1.2e-10 | 0.60 | 0.14 | 0.74 | FALSE |
44 | METSIM | Adipose | PABPC4 | 0.05 | 0.02 | lasso | 6 | 0.03 | 6.0e-05 | -7.24 | 6.0 | 2.3e-09 | -0.75 | 0.10 | 0.89 | FALSE |
45 | NTR | Blood | KIAA0754 | 0.03 | 0.00 | bslmm | 366 | 0.01 | 1.6e-03 | 0.98 | -8.3 | 1.1e-16 | 0.64 | 0.04 | 0.90 | FALSE |
46 | NTR | Blood | PABPC4 | 0.01 | 0.00 | blup | 383 | 0.00 | 2.8e-02 | -7.23 | 8.4 | 3.0e-17 | -0.73 | 0.04 | 0.62 | FALSE |
47 | YFS | Blood | AKIRIN1 | 0.22 | 0.14 | enet | 44 | 0.26 | 3.0e-83 | -4.98 | -5.5 | 4.7e-08 | 0.06 | 1.00 | 0.00 | TRUE |
48 | YFS | Blood | NDUFS5 | 0.39 | 0.26 | lasso | 16 | 0.37 | 2.2e-128 | -4.98 | -5.3 | 8.7e-08 | 0.06 | 1.00 | 0.00 | FALSE |
49 | The Cancer Genome Atlas | Breast Invasive Carcinoma | BMP8A | 0.05 | 0.01 | lasso | 6 | 0.02 | 5.5e-05 | -7.24 | -6.9 | 3.9e-12 | 0.60 | 0.48 | 0.18 | FALSE |
50 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PABPC4 | 0.03 | 0.03 | lasso | 2 | 0.04 | 1.3e-08 | -7.23 | 7.6 | 2.6e-14 | -0.66 | 0.01 | 0.99 | FALSE |
51 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | PPIEL | 0.06 | 0.08 | lasso | 1 | 0.05 | 1.4e-03 | -6.57 | -6.6 | 5.1e-11 | 0.46 | 0.01 | 0.91 | FALSE |
52 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | BMP8A | 0.04 | 0.03 | blup | 48 | 0.04 | 3.5e-05 | -6.95 | -9.1 | 1.2e-19 | 0.73 | 0.02 | 0.97 | FALSE |
53 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | PABPC4 | 0.03 | 0.01 | enet | 4 | 0.02 | 4.3e-03 | -7.23 | 6.8 | 1.2e-11 | -0.73 | 0.00 | 0.97 | FALSE |
54 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PABPC4 | 0.04 | 0.05 | blup | 31 | 0.04 | 1.2e-05 | -7.33 | 7.8 | 5.0e-15 | -0.61 | 0.00 | 1.00 | FALSE |
55 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PPIEL | 0.03 | 0.03 | lasso | 4 | 0.02 | 5.1e-03 | -7.33 | -5.9 | 4.6e-09 | 0.53 | 0.01 | 0.98 | FALSE |
56 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PABPC4 | 0.05 | 0.05 | enet | 4 | 0.05 | 5.5e-04 | -7.24 | 5.4 | 7.9e-08 | -0.70 | 0.01 | 0.91 | FALSE |
57 | The Cancer Genome Atlas | Brain Lower Grade Glioma | BMP8A | 0.05 | 0.01 | blup | 48 | 0.04 | 6.8e-05 | -8.07 | -9.2 | 2.8e-20 | 0.74 | 0.00 | 0.98 | TRUE |
58 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NDUFS5 | 0.12 | 0.11 | enet | 9 | 0.13 | 3.7e-14 | -4.98 | -5.2 | 2.5e-07 | 0.06 | 0.00 | 0.99 | FALSE |
59 | The Cancer Genome Atlas | Lung Adenocarcinoma | PABPC4 | 0.04 | 0.03 | enet | 8 | 0.04 | 4.5e-05 | -7.24 | 7.1 | 1.6e-12 | -0.68 | 0.00 | 0.99 | FALSE |
60 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PPIEL | 0.04 | 0.02 | lasso | 4 | 0.02 | 1.7e-03 | -6.95 | -6.6 | 4.1e-11 | 0.59 | 0.02 | 0.78 | FALSE |
61 | The Cancer Genome Atlas | Thyroid Carcinoma | PABPC4 | 0.09 | 0.07 | enet | 5 | 0.08 | 4.1e-08 | -7.23 | 8.8 | 1.1e-18 | -0.65 | 0.00 | 1.00 | FALSE |