Best TWAS P=1.9e-10 · Best GWAS P=2.1e-11 conditioned to 0.374
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Aorta | MADD | 0.09 | 0.03 | enet | 22 | 0.04 | 1.9e-03 | 6.3 | -5.2 | 1.7e-07 | -0.64 | 0.06 | 0.60 | TRUE |
2 | GTEx | Brain Cerebellar Hemisphere | RP11-750H9.5 | 0.17 | 0.25 | lasso | 6 | 0.21 | 3.5e-06 | 5.6 | -5.6 | 2.2e-08 | -0.80 | 0.30 | 0.35 | FALSE |
3 | GTEx | Esophagus Mucosa | MADD | 0.27 | 0.04 | enet | 18 | 0.12 | 4.1e-08 | 2.8 | -5.4 | 8.7e-08 | -0.54 | 0.20 | 0.30 | TRUE |
4 | GTEx | Esophagus Muscularis | MADD | 0.13 | 0.07 | enet | 8 | 0.11 | 2.0e-07 | 2.5 | -5.2 | 2.4e-07 | -0.65 | 0.48 | 0.36 | FALSE |
5 | GTEx | Liver | C1QTNF4 | 0.25 | 0.14 | enet | 16 | 0.20 | 2.3e-06 | -3.4 | 6.0 | 1.6e-09 | 0.82 | 0.06 | 0.90 | FALSE |
6 | GTEx | Nerve Tibial | NR1H3 | 0.10 | 0.00 | enet | 24 | 0.08 | 4.7e-06 | 4.5 | 6.4 | 1.9e-10 | 0.40 | 0.06 | 0.32 | TRUE |
7 | GTEx | Nerve Tibial | CELF1 | 0.08 | 0.02 | enet | 15 | 0.06 | 4.3e-05 | 6.0 | -6.1 | 1.1e-09 | -0.79 | 0.03 | 0.87 | FALSE |
8 | GTEx | Pituitary | MADD | 0.42 | 0.32 | lasso | 6 | 0.39 | 8.9e-11 | 5.2 | -5.2 | 2.6e-07 | -0.74 | 0.36 | 0.47 | FALSE |
9 | GTEx | Thyroid | MADD | 0.11 | 0.00 | enet | 13 | 0.01 | 6.1e-02 | -3.8 | -5.6 | 2.0e-08 | -0.43 | 0.06 | 0.16 | FALSE |
10 | NTR | Blood | MADD | 0.01 | 0.01 | enet | 8 | 0.01 | 4.7e-03 | -3.8 | -5.9 | 2.7e-09 | -0.44 | 0.15 | 0.14 | FALSE |
11 | ROSMAP | Brain Pre-frontal Cortex | ATG13 | 0.05 | 0.02 | bslmm | 266 | 0.03 | 1.3e-04 | -3.8 | 5.6 | 2.2e-08 | 0.35 | 0.07 | 0.84 | FALSE |
12 | YFS | Blood | FNBP4 | 0.02 | 0.01 | bslmm | 301 | 0.01 | 8.9e-05 | 6.6 | -5.8 | 6.3e-09 | -0.74 | 0.01 | 0.98 | FALSE |
13 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MADD | 0.11 | 0.03 | enet | 14 | 0.06 | 1.4e-11 | 2.5 | -5.3 | 1.2e-07 | -0.49 | 0.53 | 0.36 | FALSE |
14 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | MADD | 0.16 | 0.05 | blup | 64 | 0.08 | 2.2e-09 | -3.9 | -5.3 | 1.2e-07 | -0.30 | 0.69 | 0.21 | FALSE |
15 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MADD | 0.15 | 0.04 | enet | 10 | 0.06 | 4.5e-07 | 2.5 | -5.2 | 2.6e-07 | -0.40 | 0.17 | 0.06 | FALSE |