TWAS
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Models
Genes
Traits
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Traits
:
Impedance of arm (left)
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chr17:20,514,921-22,010,013
Best TWAS P=3.89e-11 · Best GWAS P=8.76e-11 conditioned to 0.0496
20.6M
20.8M
21M
21.2M
21.4M
21.6M
21.8M
22M
0
2
4
6
8
10
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
GTEx
Thyroid
KCNJ12
0.36
0.23
lasso
5
0.25
2.9e-19
5.0
6.6
3.9e-11
0.81
0.60
0.40
TRUE
3
GTEx
Testis
C17orf103
0.15
0.21
enet
4
0.19
7.1e-09
5.5
-6.0
1.5e-09
-0.33
0.34
0.65
FALSE
5
NTR
Blood
C17orf103
0.02
0.02
lasso
2
0.02
1.6e-07
5.0
-5.5
3.7e-08
-0.33
0.80
0.19
FALSE
1
GTEx
Esophagus Muscularis
C17orf103
0.16
0.06
lasso
5
0.06
2.1e-04
4.9
-5.3
1.1e-07
-0.34
0.18
0.44
FALSE
2
GTEx
Lung
C17orf103
0.08
0.01
enet
11
0.04
6.6e-04
-4.0
-5.3
1.3e-07
-0.53
0.18
0.43
FALSE