Best TWAS P=2.34e-16 · Best GWAS P=2.77e-17 conditioned to 0.014
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | LMOD1 | 0.07 | 0.06 | blup | 59 | 0.03 | 2.1e-02 | 8.4 | -8.2 | 2.3e-16 | -0.90 | 0.01 | 0.88 | TRUE |
| 2 | GTEx | Esophagus Muscularis | LMOD1 | 0.16 | 0.09 | enet | 9 | 0.08 | 7.8e-06 | 8.4 | -8.0 | 1.4e-15 | -0.98 | 0.01 | 0.99 | FALSE |
| 3 | GTEx | Esophagus Muscularis | RP11-307B6.3 | 0.20 | 0.12 | lasso | 3 | 0.12 | 5.6e-08 | 8.4 | -7.9 | 3.2e-15 | -0.97 | 0.01 | 0.99 | FALSE |
| 4 | METSIM | Adipose | LMOD1 | 0.09 | 0.07 | bslmm | 496 | 0.07 | 4.8e-10 | 8.4 | -7.8 | 4.3e-15 | -0.97 | 0.01 | 0.99 | FALSE |
| 9 | The Cancer Genome Atlas | Lung Adenocarcinoma | LMOD1 | 0.04 | 0.01 | blup | 59 | 0.01 | 5.7e-02 | 8.3 | -7.1 | 1.8e-12 | -0.84 | 0.01 | 0.82 | FALSE |
| 8 | The Cancer Genome Atlas | Brain Lower Grade Glioma | LMOD1 | 0.04 | 0.07 | enet | 6 | 0.05 | 9.4e-07 | -5.8 | -6.9 | 5.1e-12 | -0.74 | 0.24 | 0.76 | FALSE |
| 6 | The Cancer Genome Atlas | Breast Invasive Carcinoma | LMOD1 | 0.02 | 0.01 | blup | 59 | 0.02 | 1.2e-04 | 8.3 | -6.5 | 5.9e-11 | -0.85 | 0.01 | 0.97 | FALSE |
| 1 | GTEx | Adipose Subcutaneous | SHISA4 | 0.09 | 0.04 | lasso | 3 | 0.03 | 1.5e-03 | -5.2 | -5.7 | 1.5e-08 | -0.56 | 0.21 | 0.32 | FALSE |
| 5 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | SHISA4 | 0.03 | 0.01 | enet | 5 | 0.00 | 2.5e-01 | -5.8 | -5.6 | 2.2e-08 | -0.55 | 0.04 | 0.16 | FALSE |