Best TWAS P=2.4e-08 · Best GWAS P=5.87e-14 conditioned to 3.2e-09
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | C14orf119 | 0.03 | 0.03 | enet | 5 | 0.03 | 5.8e-04 | 5.3 | -5.2 | 1.9e-07 | -0.09 | 0.00 | 0.98 | FALSE |
| 2 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | HOMEZ | 0.19 | 0.01 | blup | 41 | 0.05 | 6.0e-03 | 3.1 | 5.6 | 2.4e-08 | -0.54 | 0.01 | 0.39 | TRUE |
| 3 | The Cancer Genome Atlas | Stomach Adenocarcinoma | C14orf119 | 0.08 | 0.07 | lasso | 1 | 0.05 | 8.8e-05 | 5.3 | -5.3 | 1.4e-07 | -0.09 | 0.00 | 0.99 | TRUE |