TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Arm fat percentage (right)
:
←
→
chr2:99,468,341-101,731,705
Best TWAS P=3.59e-09 · Best GWAS P=3.66e-09 conditioned to 0.0109
99.5M
100M
100.5M
101M
101.5M
0
2
4
6
8
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Artery Aorta
AFF3
0.14
0.06
lasso
5
0.07
1.2e-04
-5.9
-5.9
3.6e-09
0.69
0.01
0.99
TRUE
4
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
LONRF2
0.06
0.04
blup
69
0.04
3.4e-05
4.5
-5.4
5.3e-08
0.53
0.36
0.62
FALSE
3
GTEx
Thyroid
CHST10
0.05
0.05
lasso
5
0.03
2.6e-03
-4.6
-5.4
5.9e-08
0.39
0.33
0.49
FALSE
2
GTEx
Skin Sun Exposed Lower leg
LONRF2
0.05
0.03
lasso
2
0.02
9.3e-03
4.8
-5.3
9.3e-08
0.42
0.17
0.53
FALSE