Best TWAS P=1.26e-14 · Best GWAS P=1.89e-16 conditioned to 0.00197
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | DNA2 | 0.31 | 0.23 | enet | 10 | 0.25 | 2.3e-20 | -4.9 | 5.1 | 2.9e-07 | 0.29 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Visceral Omentum | DNA2 | 0.32 | 0.18 | lasso | 9 | 0.20 | 1.9e-10 | -5.5 | 5.7 | 1.2e-08 | 0.34 | 1.00 | 0.00 | FALSE |
3 | GTEx | Adrenal Gland | DNA2 | 0.16 | 0.12 | lasso | 6 | 0.10 | 2.2e-04 | -4.9 | 5.2 | 1.7e-07 | 0.31 | 0.49 | 0.05 | FALSE |
4 | GTEx | Artery Aorta | DNA2 | 0.22 | 0.17 | lasso | 6 | 0.16 | 5.1e-09 | -4.9 | 5.4 | 6.7e-08 | 0.32 | 1.00 | 0.00 | FALSE |
5 | GTEx | Artery Coronary | DNA2 | 0.12 | 0.12 | lasso | 5 | 0.12 | 5.3e-05 | -5.4 | 5.8 | 6.1e-09 | 0.35 | 0.31 | 0.19 | FALSE |
6 | GTEx | Artery Tibial | DNA2 | 0.10 | 0.09 | lasso | 3 | 0.11 | 4.4e-09 | -5.4 | 5.3 | 1.4e-07 | 0.31 | 0.99 | 0.00 | FALSE |
7 | GTEx | Brain Cerebellar Hemisphere | DNA2 | 0.28 | 0.29 | lasso | 11 | 0.27 | 1.4e-07 | -4.9 | 5.3 | 1.5e-07 | 0.30 | 0.72 | 0.02 | FALSE |
8 | GTEx | Brain Cerebellum | SLC25A16 | 0.22 | 0.15 | lasso | 9 | 0.19 | 2.2e-06 | -4.9 | -5.5 | 4.5e-08 | -0.33 | 0.32 | 0.04 | FALSE |
9 | GTEx | Brain Cerebellum | DNA2 | 0.45 | 0.47 | lasso | 3 | 0.47 | 1.0e-15 | -4.9 | 5.1 | 3.0e-07 | 0.28 | 1.00 | 0.00 | FALSE |
10 | GTEx | Brain Hypothalamus | SLC25A16 | 0.20 | 0.19 | lasso | 5 | 0.14 | 3.6e-04 | -5.5 | -5.5 | 3.7e-08 | -0.32 | 0.15 | 0.05 | FALSE |
11 | GTEx | Breast Mammary Tissue (Male) | DNA2 | 0.32 | 0.14 | lasso | 5 | 0.07 | 1.2e-02 | -4.5 | 5.1 | 2.9e-07 | 0.30 | 0.34 | 0.04 | FALSE |
12 | GTEx | Breast Mammary Tissue (Female) | DNA2 | 0.15 | 0.10 | lasso | 3 | 0.07 | 3.6e-03 | -4.5 | 5.1 | 2.8e-07 | 0.31 | 0.16 | 0.19 | FALSE |
13 | GTEx | Cells EBV-transformed lymphocytes | DNA2 | 0.32 | 0.14 | lasso | 2 | 0.10 | 2.9e-04 | -5.5 | 5.5 | 3.8e-08 | 0.33 | 0.46 | 0.03 | FALSE |
14 | GTEx | Cells Transformed fibroblasts | SLC25A16 | 0.10 | 0.02 | enet | 25 | 0.01 | 2.5e-02 | -4.4 | -6.8 | 1.1e-11 | -0.54 | 0.70 | 0.20 | FALSE |
15 | GTEx | Colon Transverse | DNA2 | 0.20 | 0.17 | lasso | 4 | 0.14 | 2.5e-07 | -5.4 | 5.3 | 1.2e-07 | 0.33 | 0.99 | 0.00 | FALSE |
16 | GTEx | Esophagus Muscularis | DNA2 | 0.35 | 0.24 | enet | 10 | 0.33 | 9.3e-21 | -5.4 | 5.3 | 1.2e-07 | 0.32 | 1.00 | 0.00 | FALSE |
17 | GTEx | Heart Atrial Appendage | PBLD | 0.08 | 0.02 | lasso | 2 | 0.02 | 6.1e-02 | -6.6 | -7.0 | 2.2e-12 | -0.41 | 0.11 | 0.09 | FALSE |
18 | GTEx | Heart Left Ventricle | DNA2 | 0.10 | 0.12 | lasso | 6 | 0.11 | 3.0e-06 | -4.9 | 5.1 | 3.1e-07 | 0.29 | 0.92 | 0.00 | FALSE |
19 | GTEx | Liver | DNA2 | 0.26 | 0.15 | lasso | 7 | 0.19 | 6.5e-06 | -4.9 | 5.2 | 2.3e-07 | 0.32 | 0.30 | 0.07 | FALSE |
20 | GTEx | Lung | DNA2 | 0.22 | 0.17 | enet | 12 | 0.24 | 3.9e-18 | -5.4 | 5.6 | 1.9e-08 | 0.35 | 1.00 | 0.00 | FALSE |
21 | GTEx | Muscle Skeletal | DNA2 | 0.18 | 0.16 | lasso | 4 | 0.19 | 1.7e-18 | -4.9 | 5.3 | 1.1e-07 | 0.30 | 1.00 | 0.00 | FALSE |
22 | GTEx | Ovary | DNA2 | 0.15 | 0.12 | lasso | 3 | 0.06 | 1.7e-02 | -5.3 | 5.5 | 4.9e-08 | 0.34 | 0.12 | 0.05 | FALSE |
23 | GTEx | Pancreas | DNA2 | 0.12 | 0.06 | enet | 9 | 0.08 | 4.1e-04 | -4.5 | 6.0 | 2.5e-09 | 0.40 | 0.36 | 0.32 | FALSE |
24 | GTEx | Skin Not Sun Exposed Suprapubic | DNA2 | 0.29 | 0.16 | lasso | 14 | 0.22 | 2.4e-12 | -4.9 | 5.6 | 1.8e-08 | 0.32 | 1.00 | 0.00 | FALSE |
25 | GTEx | Stomach | DNA2 | 0.31 | 0.13 | lasso | 11 | 0.19 | 2.3e-09 | -4.9 | 5.3 | 1.4e-07 | 0.32 | 1.00 | 0.00 | FALSE |
26 | GTEx | Testis | SLC25A16 | 0.24 | 0.23 | lasso | 4 | 0.19 | 7.3e-09 | -4.9 | -5.2 | 2.2e-07 | -0.29 | 1.00 | 0.00 | FALSE |
27 | GTEx | Thyroid | DNA2 | 0.18 | 0.19 | lasso | 5 | 0.19 | 2.9e-14 | -4.9 | 5.2 | 2.6e-07 | 0.29 | 1.00 | 0.00 | FALSE |
28 | METSIM | Adipose | PBLD | 0.16 | 0.15 | lasso | 12 | 0.14 | 6.4e-21 | -4.6 | -5.2 | 2.0e-07 | -0.30 | 1.00 | 0.00 | FALSE |
29 | NTR | Blood | SLC25A16 | 0.03 | 0.02 | enet | 16 | 0.03 | 1.7e-09 | -5.4 | -5.8 | 8.6e-09 | -0.41 | 1.00 | 0.00 | FALSE |
30 | ROSMAP | Brain Pre-frontal Cortex | PBLD | 0.04 | 0.01 | bslmm | 388 | 0.02 | 1.3e-03 | -3.6 | -5.1 | 2.9e-07 | -0.33 | 0.95 | 0.01 | FALSE |
31 | ROSMAP | Brain Pre-frontal Cortex | SLC25A16 | 0.17 | 0.11 | lasso | 6 | 0.15 | 2.9e-19 | -4.5 | -5.8 | 7.4e-09 | -0.33 | 1.00 | 0.00 | FALSE |
32 | YFS | Blood | SLC25A16 | 0.09 | 0.13 | lasso | 3 | 0.13 | 6.8e-39 | -5.4 | -5.8 | 8.8e-09 | -0.35 | 1.00 | 0.00 | TRUE |
33 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | PBLD | 0.06 | 0.07 | lasso | 2 | 0.04 | 2.3e-04 | -6.0 | -6.0 | 1.5e-09 | -0.32 | 0.01 | 0.99 | FALSE |
34 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SLC25A16 | 0.01 | 0.02 | lasso | 2 | 0.01 | 5.5e-04 | -5.5 | -5.5 | 4.9e-08 | -0.33 | 0.34 | 0.06 | FALSE |
35 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | DNA2 | 0.08 | 0.09 | lasso | 1 | 0.06 | 7.3e-04 | -6.6 | 6.6 | 3.2e-11 | 0.39 | 0.00 | 0.97 | FALSE |
36 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ATOH7 | 0.05 | 0.01 | lasso | 3 | 0.02 | 2.6e-03 | -6.0 | 5.2 | 2.2e-07 | 0.26 | 0.01 | 0.81 | FALSE |
37 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | PBLD | 0.03 | 0.03 | lasso | 9 | 0.02 | 1.6e-03 | -5.0 | -5.1 | 3.1e-07 | -0.26 | 0.03 | 0.76 | FALSE |
38 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PBLD | 0.10 | 0.03 | lasso | 3 | 0.04 | 2.2e-05 | -6.0 | -5.8 | 8.9e-09 | -0.31 | 0.01 | 0.99 | FALSE |
39 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | ATOH7 | 0.08 | 0.04 | enet | 19 | 0.06 | 3.1e-04 | -3.6 | 5.2 | 2.7e-07 | 0.24 | 0.03 | 0.86 | FALSE |
40 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | DNA2 | 0.05 | 0.00 | blup | 43 | 0.00 | 3.0e-01 | -5.5 | 6.1 | 9.9e-10 | 0.39 | 0.02 | 0.70 | FALSE |
41 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PBLD | 0.06 | 0.06 | enet | 6 | 0.06 | 2.5e-04 | -5.2 | -5.2 | 2.5e-07 | -0.30 | 0.21 | 0.36 | FALSE |
42 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PBLD | 0.12 | 0.18 | enet | 10 | 0.18 | 6.7e-20 | -4.6 | -5.5 | 5.0e-08 | -0.35 | 0.26 | 0.74 | FALSE |
43 | The Cancer Genome Atlas | Brain Lower Grade Glioma | SLC25A16 | 0.05 | 0.01 | blup | 42 | 0.02 | 2.9e-03 | -5.5 | -6.3 | 3.4e-10 | -0.51 | 0.11 | 0.71 | FALSE |
44 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | SLC25A16 | 0.02 | 0.02 | enet | 8 | 0.02 | 7.7e-04 | -6.6 | -6.4 | 1.2e-10 | -0.38 | 0.09 | 0.03 | FALSE |
45 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PBLD | 0.03 | 0.01 | blup | 76 | 0.01 | 1.3e-02 | -5.2 | -5.4 | 7.7e-08 | -0.30 | 0.05 | 0.39 | FALSE |
46 | The Cancer Genome Atlas | Soft Tissue Sarcoma | SLC25A16 | 0.07 | 0.03 | blup | 42 | 0.02 | 1.7e-02 | -6.6 | -7.7 | 1.3e-14 | -0.53 | 0.12 | 0.16 | TRUE |
47 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | DNA2 | 0.14 | 0.07 | blup | 43 | 0.08 | 8.6e-04 | -5.9 | -6.2 | 7.7e-10 | -0.39 | 0.07 | 0.52 | FALSE |
48 | The Cancer Genome Atlas | Thyroid Carcinoma | SLC25A16 | 0.05 | 0.05 | lasso | 3 | 0.04 | 3.8e-05 | -5.4 | -5.7 | 1.5e-08 | -0.36 | 0.30 | 0.10 | FALSE |