[Hub]/) : Traits : Arm predicted mass (right) : ← →

chr3:51,860,817-53,860,103

Best TWAS P=1.9e-09 · Best GWAS P=1.05e-08 conditioned to 1

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	CommonMind	Brain Pre-frontal Cortex	NT5DC2	0.11	0.05	enet	22	0.04	5.0e-06	3.4	-5.1	3.0e-07	-0.47	0.27	0.66	FALSE
2	GTEx	Pancreas	RFT1	0.32	0.13	lasso	4	0.17	1.3e-07	5.7	5.2	1.9e-07	0.93	0.00	1.00	FALSE
3	GTEx	Prostate	RFT1	0.39	0.18	enet	17	0.24	1.1e-06	3.6	5.7	1.4e-08	0.68	0.10	0.83	FALSE
4	GTEx	Stomach	RFT1	0.23	0.03	enet	19	0.06	6.3e-04	3.6	5.6	1.8e-08	0.75	0.07	0.86	FALSE
5	The Cancer Genome Atlas	Bladder Urothelial Carcinoma	RFT1	0.18	0.10	lasso	7	0.10	1.8e-08	5.2	5.4	7.8e-08	0.97	0.00	1.00	TRUE
6	The Cancer Genome Atlas	Bladder Urothelial Carcinoma	TMEM110	0.19	0.13	blup	59	0.13	4.2e-11	4.6	5.4	7.4e-08	0.84	0.06	0.94	FALSE
7	The Cancer Genome Atlas	Breast Invasive Carcinoma	RFT1	0.10	0.08	enet	11	0.15	2.3e-29	5.0	5.4	5.7e-08	0.80	0.03	0.96	TRUE
8	The Cancer Genome Atlas	Cervical Squamous Cell Carcinoma	RFT1	0.14	0.08	enet	12	0.15	5.5e-08	5.2	5.4	8.2e-08	0.78	0.01	0.98	FALSE
9	The Cancer Genome Atlas	Colon Adenocarcinoma	RFT1	0.10	0.05	enet	12	0.05	1.0e-03	5.3	5.5	4.0e-08	0.87	0.01	0.93	FALSE
10	The Cancer Genome Atlas	Head and Neck Squamous Cell Carcinoma	TMEM110	0.27	0.10	blup	59	0.14	3.0e-15	4.5	5.2	2.4e-07	0.84	0.01	0.99	FALSE
11	The Cancer Genome Atlas	Kidney Renal Papillary Cell Carcinoma	RFT1	0.24	0.12	lasso	5	0.20	1.3e-11	5.0	5.2	1.7e-07	0.81	0.02	0.97	FALSE
12	The Cancer Genome Atlas	Brain Lower Grade Glioma	NISCH	0.06	0.05	lasso	4	0.04	7.5e-06	5.2	5.1	3.0e-07	0.54	0.00	1.00	FALSE
13	The Cancer Genome Atlas	Brain Lower Grade Glioma	SPCS1	0.15	0.03	lasso	3	0.04	4.3e-05	4.9	5.4	6.4e-08	0.58	0.00	0.78	TRUE
14	The Cancer Genome Atlas	Brain Lower Grade Glioma	TMEM110	0.13	0.06	blup	59	0.08	3.3e-09	3.3	5.2	1.6e-07	0.67	0.70	0.25	TRUE
15	The Cancer Genome Atlas	Liver Hepatocellular Carcinoma	RFT1	0.31	0.07	blup	45	0.19	1.8e-09	3.2	6.0	2.1e-09	0.86	0.02	0.98	FALSE
16	The Cancer Genome Atlas	Liver Hepatocellular Carcinoma	SFMBT1	0.17	0.08	lasso	2	0.06	5.5e-04	5.3	5.3	1.2e-07	0.97	0.01	0.94	FALSE
17	The Cancer Genome Atlas	Lung Adenocarcinoma	RFT1	0.14	0.11	blup	45	0.11	1.9e-12	5.0	5.4	6.0e-08	0.92	0.01	0.99	FALSE
18	The Cancer Genome Atlas	Lung Adenocarcinoma	SPCS1	0.11	0.00	blup	41	0.01	9.9e-03	-3.6	5.9	3.5e-09	0.36	0.00	0.09	TRUE
19	The Cancer Genome Atlas	Lung Squamous Cell Carcinoma	RFT1	0.07	0.03	enet	7	0.06	1.2e-07	4.7	5.5	3.0e-08	0.75	0.02	0.98	FALSE
20	The Cancer Genome Atlas	Ovarian Serous Cystadenocarcinoma	RFT1	0.21	0.10	lasso	6	0.23	1.9e-15	5.2	5.3	9.6e-08	0.82	0.01	0.99	FALSE
21	The Cancer Genome Atlas	Ovarian Serous Cystadenocarcinoma	TMEM110	0.20	0.13	blup	59	0.15	3.0e-10	5.6	5.5	3.2e-08	0.82	0.00	1.00	TRUE
22	The Cancer Genome Atlas	Prostate Adenocarcinoma	RFT1	0.18	0.09	blup	45	0.09	4.8e-10	5.2	5.2	1.7e-07	0.93	0.01	0.99	TRUE
23	The Cancer Genome Atlas	Prostate Adenocarcinoma	TMEM110	0.20	0.06	blup	59	0.10	1.2e-10	5.6	5.5	5.0e-08	0.83	0.00	1.00	FALSE
24	The Cancer Genome Atlas	Soft Tissue Sarcoma	RFT1	0.16	0.12	enet	16	0.14	1.7e-08	5.2	5.4	5.2e-08	0.90	0.01	0.99	FALSE
25	The Cancer Genome Atlas	Soft Tissue Sarcoma	TMEM110	0.12	0.07	blup	59	0.12	7.5e-08	5.4	5.3	1.4e-07	0.73	0.02	0.98	FALSE
26	The Cancer Genome Atlas	Skin Cutaneous Melanoma	RFT1	0.29	0.04	blup	45	0.11	8.2e-04	5.0	5.8	7.8e-09	0.79	0.01	0.83	FALSE
27	The Cancer Genome Atlas	Stomach Adenocarcinoma	RFT1	0.13	0.05	blup	45	0.10	6.9e-08	5.3	6.0	2.8e-09	0.85	0.01	0.99	FALSE
28	The Cancer Genome Atlas	Stomach Adenocarcinoma	TMEM110	0.19	0.12	blup	59	0.13	1.6e-09	4.7	5.2	2.6e-07	0.79	0.14	0.85	FALSE
29	The Cancer Genome Atlas	Testicular Germ Cell Tumors	RFT1	0.39	0.22	lasso	4	0.25	3.1e-09	5.0	5.3	1.3e-07	0.94	0.01	0.99	FALSE
30	The Cancer Genome Atlas	Testicular Germ Cell Tumors	TMEM110	0.20	0.01	lasso	2	0.09	3.2e-04	5.6	5.6	2.7e-08	0.97	0.00	0.90	FALSE
31	The Cancer Genome Atlas	Uterine Corpus Endometrial Carcinoma	RFT1	0.29	0.15	blup	45	0.15	6.5e-05	4.7	6.0	1.9e-09	0.85	0.01	0.85	TRUE