Best TWAS P=1.05e-17 · Best GWAS P=8.15e-16 conditioned to 0.00101
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Artery Tibial | RP11-723O4.9 | 0.12 | 0.04 | lasso | 5 | 0.06 | 3.4e-05 | 1.4 | 5.4 | 6.7e-08 | -0.52 | 0.08 | 0.87 | FALSE |
| 2 | GTEx | Testis | HMCES | 0.75 | 0.56 | lasso | 8 | 0.55 | 8.4e-29 | 5.8 | 5.8 | 5.1e-09 | -0.15 | 1.00 | 0.00 | FALSE |
| 3 | METSIM | Adipose | COPG1 | 0.04 | 0.02 | bslmm | 303 | 0.03 | 7.6e-06 | 5.7 | -5.2 | 2.7e-07 | 0.33 | 0.78 | 0.02 | FALSE |
| 4 | YFS | Blood | H1FX | 0.02 | 0.01 | lasso | 3 | 0.01 | 1.4e-03 | -7.0 | 6.9 | 4.8e-12 | -0.84 | 0.10 | 0.44 | FALSE |
| 5 | The Cancer Genome Atlas | Breast Invasive Carcinoma | H1FX | 0.02 | 0.02 | lasso | 5 | 0.03 | 6.5e-07 | 6.0 | 8.5 | 1.7e-17 | -0.62 | 0.10 | 0.88 | FALSE |
| 6 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | H1FX | 0.02 | 0.00 | blup | 36 | 0.00 | 5.1e-01 | -8.1 | 8.6 | 1.0e-17 | -0.65 | 0.00 | 0.69 | TRUE |