Best TWAS P=3.11e-10 · Best GWAS P=3.5e-10 conditioned to 1
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | FEZ2 | 0.16 | 0.24 | lasso | 2 | 0.22 | 1.3e-26 | 6.3 | -6.3 | 3.1e-10 | -1.00 | 0.00 | 1.00 | TRUE |
| 2 | GTEx | Adipose Subcutaneous | AC007401.1 | 0.10 | 0.02 | lasso | 4 | 0.02 | 5.4e-03 | 5.8 | 6.2 | 5.6e-10 | 0.88 | 0.02 | 0.95 | FALSE |
| 3 | GTEx | Artery Tibial | CRIM1 | 0.10 | 0.04 | lasso | 4 | 0.05 | 1.4e-04 | 5.8 | -6.3 | 3.9e-10 | -0.87 | 0.02 | 0.98 | FALSE |
| 4 | GTEx | Brain Cerebellar Hemisphere | CRIM1 | 0.36 | 0.21 | lasso | 5 | 0.16 | 5.4e-05 | 5.9 | 5.8 | 6.6e-09 | 0.86 | 0.03 | 0.90 | FALSE |
| 5 | GTEx | Brain Cerebellar Hemisphere | FEZ2 | 0.41 | 0.30 | lasso | 6 | 0.28 | 8.6e-08 | 5.6 | 5.7 | 1.4e-08 | 0.91 | 0.03 | 0.97 | FALSE |
| 6 | GTEx | Brain Cerebellar Hemisphere | AC007401.1 | 0.40 | 0.26 | lasso | 4 | 0.22 | 2.3e-06 | 5.9 | 5.8 | 8.9e-09 | 0.89 | 0.04 | 0.95 | FALSE |
| 7 | GTEx | Brain Cerebellar Hemisphere | RP11-490M8.1 | 0.37 | 0.18 | lasso | 4 | 0.15 | 1.2e-04 | 5.6 | 5.8 | 8.9e-09 | 0.92 | 0.02 | 0.92 | FALSE |
| 8 | GTEx | Brain Cerebellum | FEZ2 | 0.44 | 0.26 | lasso | 6 | 0.23 | 2.6e-07 | 5.4 | 5.6 | 1.7e-08 | 0.85 | 0.08 | 0.92 | FALSE |
| 9 | GTEx | Brain Cerebellum | AC007401.1 | 0.27 | 0.21 | enet | 5 | 0.20 | 1.5e-06 | 5.9 | 5.9 | 3.8e-09 | 0.87 | 0.04 | 0.94 | FALSE |
| 10 | GTEx | Brain Cerebellum | RP11-490M8.1 | 0.21 | 0.21 | lasso | 4 | 0.20 | 1.4e-06 | 5.0 | 5.3 | 9.6e-08 | 0.84 | 0.04 | 0.93 | FALSE |
| 11 | GTEx | Spleen | FEZ2 | 0.42 | 0.16 | enet | 25 | 0.17 | 3.9e-05 | 5.0 | 5.6 | 1.8e-08 | 0.69 | 0.04 | 0.90 | FALSE |
| 12 | GTEx | Whole Blood | FEZ2 | 0.11 | 0.09 | enet | 25 | 0.10 | 8.4e-10 | 5.6 | 5.5 | 4.5e-08 | 0.82 | 0.07 | 0.93 | FALSE |
| 13 | GTEx | Whole Blood | AC007401.1 | 0.06 | 0.06 | lasso | 5 | 0.05 | 4.6e-05 | 5.6 | 5.8 | 6.4e-09 | 0.91 | 0.07 | 0.91 | FALSE |
| 14 | NTR | Blood | CRIM1 | 0.09 | 0.10 | lasso | 6 | 0.11 | 3.1e-32 | 5.4 | -5.7 | 1.0e-08 | -0.93 | 0.07 | 0.93 | FALSE |
| 15 | ROSMAP | Brain Pre-frontal Cortex | FEZ2 | 0.41 | 0.55 | lasso | 5 | 0.58 | 3.1e-93 | 5.9 | -5.9 | 4.0e-09 | -0.95 | 0.05 | 0.95 | FALSE |
| 16 | The Cancer Genome Atlas | Breast Invasive Carcinoma | FEZ2 | 0.01 | 0.01 | blup | 85 | 0.01 | 1.0e-03 | 5.6 | -6.1 | 9.1e-10 | -0.92 | 0.01 | 0.96 | FALSE |
| 17 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | FEZ2 | 0.06 | 0.05 | lasso | 4 | 0.04 | 3.3e-03 | 5.8 | -5.8 | 6.9e-09 | -0.94 | 0.03 | 0.84 | FALSE |
| 18 | The Cancer Genome Atlas | Colon Adenocarcinoma | FEZ2 | 0.11 | 0.03 | blup | 84 | 0.07 | 6.1e-05 | 6.3 | -5.5 | 3.1e-08 | -0.91 | 0.02 | 0.97 | FALSE |
| 19 | The Cancer Genome Atlas | Prostate Adenocarcinoma | FEZ2 | 0.06 | 0.05 | blup | 87 | 0.08 | 1.4e-08 | 5.9 | -6.1 | 1.2e-09 | -0.93 | 0.04 | 0.96 | FALSE |