Best TWAS P=1.24e-10 · Best GWAS P=5.23e-10 conditioned to 0.0315
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | PTPN13 | 0.13 | 0.18 | bslmm | 418 | 0.18 | 6.8e-22 | 5.5 | -5.8 | 7.2e-09 | -0.44 | 0.28 | 0.72 | FALSE |
| 2 | GTEx | Artery Aorta | MAPK10 | 0.15 | 0.17 | enet | 16 | 0.17 | 1.4e-09 | 5.8 | -5.8 | 6.1e-09 | -0.81 | 0.01 | 0.99 | FALSE |
| 3 | GTEx | Brain Caudate basal ganglia | PTPN13 | 0.26 | 0.16 | enet | 17 | 0.11 | 4.6e-04 | 5.4 | -5.1 | 3.0e-07 | -0.34 | 0.17 | 0.61 | FALSE |
| 4 | GTEx | Colon Sigmoid | MAPK10 | 0.25 | 0.11 | lasso | 8 | 0.07 | 1.6e-03 | 5.9 | -6.4 | 1.2e-10 | -0.74 | 0.02 | 0.95 | TRUE |
| 5 | GTEx | Thyroid | PTPN13 | 0.41 | 0.31 | lasso | 6 | 0.30 | 3.2e-23 | 6.0 | 5.9 | 4.8e-09 | 0.81 | 0.01 | 0.99 | FALSE |
| 6 | ROSMAP | Brain Pre-frontal Cortex | PTPN13 | 0.09 | 0.03 | blup | 409 | 0.07 | 4.7e-09 | 5.5 | -5.7 | 1.3e-08 | -0.45 | 0.25 | 0.75 | FALSE |