[Hub]/) : Traits : Trunk fat-free mass : ← →

chr19:41,165,252-42,626,207

Best TWAS P=1.49e-11 · Best GWAS P=1.41e-10 conditioned to 0.463

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
33	The Cancer Genome Atlas	Pheochromocytoma and Paraganglioma	ATP5SL	0.23	0.05	blup	18	0.05	4.5e-03	6.4	-6.8	1.5e-11	-0.90	0.01	0.86	TRUE
35	The Cancer Genome Atlas	Rectum Adenocarcinoma	B3GNT8	0.39	0.08	blup	20	0.07	1.1e-02	6.1	6.4	1.2e-10	0.85	0.00	0.30	FALSE
7	GTEx	Brain Cerebellar Hemisphere	CTC-435M10.6	0.29	0.20	lasso	4	0.18	2.6e-05	6.3	6.4	1.5e-10	0.99	0.01	0.97	FALSE
9	GTEx	Brain Cerebellum	CTC-435M10.6	0.18	0.01	lasso	4	0.03	5.1e-02	6.0	6.4	1.9e-10	0.88	0.02	0.85	FALSE
8	GTEx	Brain Cerebellum	B3GNT8	0.28	0.23	lasso	5	0.21	9.2e-07	6.3	6.2	7.3e-10	0.99	0.02	0.98	FALSE
34	The Cancer Genome Atlas	Prostate Adenocarcinoma	ATP5SL	0.03	0.03	blup	18	0.03	4.1e-04	6.4	-6.1	8.1e-10	-0.99	0.01	0.94	FALSE
6	GTEx	Brain Cerebellar Hemisphere	B3GNT8	0.38	0.30	lasso	5	0.23	1.1e-06	6.3	6.1	8.6e-10	0.97	0.01	0.98	FALSE
5	GTEx	Artery Aorta	CTC-435M10.6	0.16	0.14	lasso	3	0.13	1.3e-07	6.3	6.1	9.9e-10	0.99	0.02	0.98	FALSE
17	GTEx	Muscle Skeletal	EXOSC5	0.07	0.03	enet	6	0.03	4.1e-04	6.0	6.0	1.5e-09	0.98	0.01	0.99	FALSE
27	The Cancer Genome Atlas	Bladder Urothelial Carcinoma	BCKDHA	0.02	0.02	lasso	2	0.02	1.5e-02	6.1	-6.0	1.6e-09	-0.99	0.01	0.82	FALSE
19	GTEx	Nerve Tibial	CTC-435M10.6	0.18	0.15	lasso	6	0.14	5.5e-10	5.7	6.0	1.7e-09	0.98	0.02	0.98	FALSE
22	GTEx	Testis	EXOSC5	0.31	0.33	enet	10	0.33	1.8e-15	5.9	6.0	1.7e-09	0.99	0.02	0.98	FALSE
32	The Cancer Genome Atlas	Brain Lower Grade Glioma	EXOSC5	0.04	0.03	lasso	2	0.02	5.8e-03	6.3	6.0	1.8e-09	0.95	0.01	0.77	FALSE
1	CommonMind	Brain Pre-frontal Cortex	ATP5SL	0.34	0.48	bslmm	365	0.48	1.5e-65	6.2	-6.0	2.0e-09	-0.99	0.01	0.99	FALSE
31	The Cancer Genome Atlas	Brain Lower Grade Glioma	ATP5SL	0.02	0.03	enet	4	0.02	7.0e-04	6.0	-6.0	2.0e-09	-0.99	0.02	0.89	FALSE
36	The Cancer Genome Atlas	Thyroid Carcinoma	ATP5SL	0.02	0.02	blup	18	0.02	3.5e-03	6.4	-6.0	2.1e-09	-0.99	0.01	0.83	FALSE
10	GTEx	Brain Frontal Cortex BA9	ATP5SL	0.28	0.15	lasso	3	0.10	1.0e-03	5.9	-5.9	3.0e-09	-0.98	0.02	0.92	FALSE
11	GTEx	Cells Transformed fibroblasts	B3GNT8	0.10	0.02	lasso	2	0.03	2.0e-03	5.8	5.9	3.4e-09	0.98	0.04	0.96	FALSE
26	The Cancer Genome Atlas	Bladder Urothelial Carcinoma	B3GNT8	0.03	0.04	blup	20	0.04	3.2e-04	6.0	5.9	3.4e-09	0.99	0.01	0.96	FALSE
13	GTEx	Colon Transverse	B3GNT8	0.21	0.17	lasso	4	0.18	6.7e-09	6.0	5.9	3.8e-09	0.97	0.04	0.96	FALSE
24	YFS	Blood	ATP5SL	0.06	0.02	lasso	12	0.03	1.1e-09	6.3	5.9	3.8e-09	0.85	0.01	0.99	FALSE
16	GTEx	Lung	CTC-435M10.6	0.13	0.11	lasso	3	0.10	3.3e-08	5.8	5.9	4.2e-09	0.98	0.04	0.96	FALSE
20	GTEx	Stomach	B3GNT8	0.22	0.14	lasso	7	0.12	1.4e-06	6.0	5.8	4.9e-09	0.97	0.02	0.98	FALSE
3	GTEx	Artery Aorta	ATP5SL	0.14	0.00	lasso	2	0.01	1.6e-01	5.8	-5.8	5.2e-09	-0.98	0.03	0.57	FALSE
28	The Cancer Genome Atlas	Breast Invasive Carcinoma	B3GNT8	0.04	0.07	blup	20	0.07	1.2e-13	5.8	5.7	9.4e-09	0.98	0.02	0.98	FALSE
12	GTEx	Cells Transformed fibroblasts	CTC-435M10.6	0.18	0.16	lasso	2	0.15	4.2e-11	5.8	5.7	1.5e-08	0.96	0.02	0.98	FALSE
15	GTEx	Esophagus Muscularis	CTC-435M10.6	0.12	0.12	lasso	2	0.10	1.4e-06	5.7	5.7	1.5e-08	0.95	0.03	0.97	FALSE
23	GTEx	Thyroid	EXOSC5	0.14	0.08	lasso	5	0.05	8.4e-05	6.0	5.6	1.9e-08	0.97	0.05	0.94	FALSE
4	GTEx	Artery Aorta	B3GNT8	0.14	0.09	lasso	2	0.08	2.6e-05	6.3	5.6	2.4e-08	0.97	0.02	0.98	FALSE
14	GTEx	Colon Transverse	CTC-435M10.6	0.26	0.19	enet	19	0.22	5.8e-11	5.8	5.6	2.4e-08	0.91	0.03	0.97	FALSE
30	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	ATP5SL	0.04	0.03	enet	12	0.03	1.6e-04	6.4	-5.6	2.7e-08	-0.92	0.00	0.99	FALSE
29	The Cancer Genome Atlas	Colon Adenocarcinoma	B3GNT8	0.09	0.13	blup	20	0.11	5.2e-07	5.7	5.5	3.1e-08	0.98	0.02	0.98	FALSE
37	The Cancer Genome Atlas	Thyroid Carcinoma	B3GNT8	0.10	0.12	lasso	3	0.11	1.3e-10	6.0	5.3	9.9e-08	0.97	0.03	0.97	FALSE
18	GTEx	Nerve Tibial	B3GNT8	0.22	0.17	enet	12	0.20	6.6e-14	5.7	5.3	1.0e-07	0.96	0.02	0.98	FALSE
25	YFS	Blood	BCKDHA	0.08	0.05	enet	27	0.06	1.9e-18	6.3	-5.2	2.1e-07	-0.89	0.01	0.99	FALSE
21	GTEx	Stomach	CTC-435M10.6	0.23	0.14	lasso	11	0.13	1.0e-06	5.7	5.2	2.3e-07	0.94	0.02	0.98	FALSE
2	CommonMind	Brain Pre-frontal Cortex	BCKDHA	0.12	0.08	lasso	6	0.10	8.9e-13	6.3	-5.2	2.4e-07	-0.95	0.02	0.98	FALSE
38	The Cancer Genome Atlas	Thyroid Carcinoma	EXOSC5	0.02	0.01	blup	31	0.03	4.5e-04	5.8	5.1	3.1e-07	0.96	0.01	0.94	FALSE