Best TWAS P=3.56e-13 · Best GWAS P=1.04e-12 conditioned to 0.0318
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | RAB24 | 0.14 | 0.06 | enet | 14 | 0.09 | 4.2e-11 | 6.3 | 6.7 | 2.2e-11 | 0.71 | 0.13 | 0.87 | FALSE |
2 | GTEx | Adipose Subcutaneous | RAB24 | 0.17 | 0.08 | enet | 26 | 0.14 | 1.7e-11 | 6.2 | 6.6 | 4.1e-11 | 0.62 | 0.17 | 0.83 | FALSE |
3 | GTEx | Artery Tibial | RAB24 | 0.18 | 0.09 | lasso | 3 | 0.07 | 2.3e-06 | 6.2 | 7.0 | 1.8e-12 | 0.77 | 0.05 | 0.95 | FALSE |
4 | GTEx | Breast Mammary Tissue (Female) | MXD3 | 0.23 | 0.08 | lasso | 3 | 0.09 | 1.1e-03 | 5.6 | 5.3 | 9.1e-08 | 0.22 | 0.06 | 0.20 | FALSE |
5 | GTEx | Esophagus Mucosa | UIMC1 | 0.08 | 0.00 | lasso | 5 | 0.00 | 3.5e-01 | -5.2 | -5.6 | 2.2e-08 | -0.35 | 0.13 | 0.03 | TRUE |
6 | GTEx | Heart Atrial Appendage | MXD3 | 0.33 | 0.15 | enet | 24 | 0.16 | 1.5e-07 | 3.6 | 6.6 | 3.8e-11 | 0.29 | 0.82 | 0.02 | FALSE |
7 | GTEx | Nerve Tibial | RAB24 | 0.27 | 0.08 | enet | 32 | 0.17 | 6.3e-12 | 4.4 | 7.3 | 3.6e-13 | 0.47 | 0.12 | 0.86 | TRUE |
8 | GTEx | Skin Sun Exposed Lower leg | MXD3 | 0.19 | 0.14 | lasso | 6 | 0.12 | 4.2e-10 | 5.6 | 5.1 | 2.6e-07 | 0.17 | 0.96 | 0.04 | FALSE |
9 | METSIM | Adipose | RAB24 | 0.05 | 0.02 | lasso | 4 | 0.02 | 1.2e-03 | 6.3 | 6.2 | 5.9e-10 | 0.81 | 0.04 | 0.92 | FALSE |
10 | YFS | Blood | MXD3 | 0.04 | 0.03 | lasso | 4 | 0.04 | 5.8e-13 | -3.0 | 5.2 | 2.1e-07 | 0.22 | 1.00 | 0.00 | FALSE |
11 | The Cancer Genome Atlas | Colon Adenocarcinoma | RAB24 | 0.08 | 0.04 | enet | 7 | 0.06 | 3.4e-04 | -3.6 | 6.8 | 1.2e-11 | 0.54 | 0.02 | 0.64 | FALSE |
12 | The Cancer Genome Atlas | Prostate Adenocarcinoma | F12 | 0.05 | 0.03 | enet | 4 | 0.03 | 4.0e-04 | 5.7 | 5.6 | 1.6e-08 | 0.25 | 0.00 | 0.88 | FALSE |